Protein Model on 6atk_C_1_V_1 (TEMPLATE: 6atk )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:3]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(AMPN_HUMAN) C 1 (C) polymer(polypeptide(L)) [891 aa] Aminopeptidase N :AMPN_HUMAN
2 b V 1 (C) non-polymer(NAG) 2-acetamido-2-deoxy-beta-D-glucopyranose 84S 85Y 86R 234N 271T (identity: 100.0 %/99.0 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6atk_C_1 identity=99.0%
queryA        68:SKAWNRYRLPNTLKPDSYRVTLRPYLTPNDRGLYVFKGSSTVRFTCKEATDVIIIHSKKLNYTLSQGHRVVLRGVGGSQPPDIDKTELVEPTEYLVVHLK: 167
                :****************************************************************************************************:
6atk_C_1       6:SKAWNRYRLPNTLKPDSYRVTLRPYLTPNDRGLYVFKGSSTVRFTCKEATDVIIIHSKKLNYTLSQGHRVVLRGVGGSQPPDIDKTELVEPTEYLVVHLK: 105
SecStr          :  GGGSSS  SSEEEEEEEEEEEEE S  TTS  EEEEEEEEEEEESS  SEEEEE  SEEE  BTTBSEEEEESTT     EEEEEEETTTTEEEEEES:    
ExpBur          :eeeeeeeebeebbebeebebebbbebeeeeeeebbbebebbbebbbeeebebbbbbbeebebeeeeeeebbbeebeebeeeebeebeebeebbbbbbbbe:    
Contact         :                bbb                                                                                 

queryA       168:GSLVKDSQYEMDSEFEGELADDLAGFYRSEYMEGNVRKVVATTQMQAADARKSFPCFDEPAMKAEFNITLIHPKDLTALSNMLPKGPSTPLPEDPNWNVT: 267
                :****************************************************************************************************:
6atk_C_1     106:GSLVKDSQYEMDSEFEGELADDLAGFYRSEYMEGNVRKVVATTQMQAADARKSFPCFDEPAMKAEFNITLIHPKDLTALSNMLPKGPSTPLPEDPNWNVT: 205
SecStr          :S   TT EEEEEEEEEEE  SSSSEEEEEEEEETTEEEEEEEEE TTTTGGGTS B  STT  BEEEEEEEEETTSEEEESS BSS  EEETTEEEEEEE:    
ExpBur          :eebeeeeebbbbbebebebbeebbbbbbbebeeeeeeebbbbbbbbbbbbbbbbbbbbbbbbbbebebbbbbeeebebbbbbeeeeeeeebeeeeebbeb:    
Contact         :                                                                  b                                 

queryA       268:EFHTTPKMSTYLLAFIVSEFDYVEKQASNGVLIRIWARPSAIAAGHGDYALNVTGPILNFFAGHYDTPYPLPKSDQIGLPDFNAGAMENWGLVTYRENSL: 367
                :****************************************************************************************************:
6atk_C_1     206:EFHTTPKMSTYLLAFIVSEFDYVEKQASNGVLIRIWARPSAIAAGHGDYALNVTGPILNFFAGHYDTPYPLPKSDQIGLPDFNAGAMENWGLVTYRENSL: 305
SecStr          :EB    SB GGG  EEEE  EEEEEE TTS EEEEEE HHHHHTTTTHHHHHHHHHHHHHHHHHTT    SSEEEEEEESS SSSEE  TTEEEEEHHHH:    
ExpBur          :ebeebbebbbbbbbbbbbebeeeeeebeeebebbbbbbbebbeebbbebbbebbbebbebbbebbebebebebbbbbbbbbbeeebbbbbbbbbbbbbbb:    
Contact         :   b                                                                                                

queryA       368:LFDPLSSSSSNKERVVTVIAHELAHQWFGNLVTIEWWNDLWLNEGFASYVEYLGADYAEPTWNLKDLMVLNDVYRVMAVDALASSHPLSTPASEINTPAQ: 467
                :****************************************************************************************************:
6atk_C_1     306:LFDPLSSSSSNKERVVTVIAHELAHQWFGNLVTIEWWNDLWLNEGFASYVEYLGADYAEPTWNLKDLMVLNDVYRVMAVDALASSHPLSTPASEINTPAQ: 405
SecStr          :   TTTS HHHHHHHHHHHHHHHHHTTBTTTEEESSGGGTHHHHHHHHHHHHHHHHHH TTS GGGGHHHHTHHHHHHHHTSTT   SS  GGG  SHHH:    
ExpBur          :bbeeebbbeebebebbbbbbbbbbbbbbbbbbbbebbbbbbbbbbbbbbbbbbbbeeebeebebeebbbbebbbebbebbbbbebbbbbbeeeebebeee:    

queryA       468:ISELFDAISYSKGASVLRMLSSFLSEDVFKQGLASYLHTFAYQNTIYLNLWDHLQEAVNNRSIQLPTTVRDIMNRWTLQMGFPVITVDTSTGTLSQEHFL: 567
                :****************************************************************************************************:
6atk_C_1     406:ISELFDAISYSKGASVLRMLSSFLSEDVFKQGLASYLHTFAYQNTIYLNLWDHLQEAVNNRSIQLPTTVRDIMNRWTLQMGFPVITVDTSTGTLSQEHFL: 505
SecStr          :HHHTSSHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHTTEEE HHHHHHHHHHHHHHHT   SS HHHHHHHHHSS   EEEEEETTTTEEEEEE  :    
ExpBur          :beebebebbebbbbbbbbbbbebbeeebbeebbbebbeebeeebbebeebbebbbebbeeeeeebeeebeebbbebbebbbbbbbebebeebebebebbb:    

queryA       568:LDPDSNVTRPSEFNYVWIVPITSIRDGRQQQDYWLIDVRAQNDLFSTSGNEWVLLNLNVTGYYRVNYDEENWRKIQTQLQRDHSAIPVINRAQIINDAFN: 667
                :****************************************************************************************************:
6atk_C_1     506:LDPDSNVTRPSEFNYVWIVPITSIRDGRQQQDYWLIDVRAQNDLFSTSGNEWVLLNLNVTGYYRVNYDEENWRKIQTQLQRDHSAIPVINRAQIINDAFN: 605
SecStr          :SSTT    S  TTTT   EEE EEETTEE   EEE SSEEE GGG   TT  EEESGGG SS EEEE HHHHHHHHHHHHHHGGGS HHHHHHHHHHHHH:    
ExpBur          :ebeebeeeeebebebbbbbbbbbbbeeeebeebebeeeeeeeebbebeeeebbbbbbebbbbbbbbbbeebbeebbebbeeebeebeebbbbbbbbbbbb:    

queryA       668:LASAHKVPVTLALNNTLFLIEERQYMPWEAALSSLSYFKLMFDRSEVYGPMKNYLKKQVTPLFIHFRNNTNNWREIPENLMDQYSEVNAISTACSNGVPE: 767
                :****************************************************************************************************:
6atk_C_1     606:LASAHKVPVTLALNNTLFLIEERQYMPWEAALSSLSYFKLMFDRSEVYGPMKNYLKKQVTPLFIHFRNNTNNWREIPENLMDQYSEVNAISTACSNGVPE: 705
SecStr          :HHHTTSS HHHHHHTTGGGGG   HHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHTTTTTS  SSHHHHHHHHHHHHHHHHTT HH:    
ExpBur          :bbebeebebebbbebbebbeebeebbbbebbbebbeebebbbbeeebbebbeebbeebbeebbeebeeebeebeeebeebbebbbbebbbebbbebebee:    

queryA       768:CEEMVSGLFKQWMENPNNNPIHPNLRSTVYCNAIAQGGEEEWDFAWEQFRNATLVNEADKLRAALACSKELWILNRYLSYTLNPDLIRKQDATSTIISIT: 867
                :****************************************************************************************************:
6atk_C_1     706:CEEMVSGLFKQWMENPNNNPIHPNLRSTVYCNAIAQGGEEEWDFAWEQFRNATLVNEADKLRAALACSKELWILNRYLSYTLNPDLIRKQDATSTIISIT: 805
SecStr          :HHHHHHHHHHHHHHSTTS  S HHHHHHHHHHHHHHS HHHHHHHHHHHHT SSHHHHHHHHHHGGG   HHHHHHHHHHHT TTTS HHHHHHHHHHHH:    
ExpBur          :bbebbeeebeebbeeeeeeebebbbbebbbebbbbeebeeebebbbeebeeeebbbbbbbbbebbbbbeeeebbeebbeebeeeebbeebbbeebbbebb:    

queryA       868:NNVIGQGLVWDFVQSNWKKLFNDYGGGSFSFSNLIQAVTRRFSTEYELQQLEQFKKDNEETGFGSGTRALEQALEKTKANIKWVKENKEVVLQWFTENSK: 967
                :**********************         *********************************************************************:
6atk_C_1     806:NNVIGQGLVWDFVQSNWKKLFNXXXXXXXXXSNLIQAVTRRFSTEYELQQLEQFKKDNEETGFGSGTRALEQALEKTKANIKWVKENKEVVLQWFTENSK: 905
SecStr          :HSTTHHHHHHHHHHHHHHHHH --------- HHHHHHHTT  SHHHHHHHHHHHHHHTTT  GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH  :    
ExpBur          :ebeebbebbbebbeeebeeeee---------eebbebbbebbbeeebbebbeebeeebeeeebeebebbbebbbbebeebeebbeebeeebbebbeeeee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123