Protein Model on 6a8z_B_1_F_1 (TEMPLATE: 6a8z )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(AMPN_HUMAN) B 1 (B) polymer(polypeptide(L)) [431 aa] Zinc metalloprotease, putative :Q9RVZ5_DEIRA
2 b F 1 (B) non-polymer(ZN) ZINC ION 388H 392H 411E 477Y (identity: 100.0 %/34.8 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6a8z_B_1 identity=34.8%
queryA       218:RKSFPCFDEPAMKAEFNITLIHPKDLTALSNMLPKGPSTPLPEDPNWNVTEFHTTPKMSTYLLAFIVSEFDY-------VEKQASNGVLIRIWARPSAIA: 310
                :*   ** * *   * *      *    *    *     *   *        *       ** *  **               *      *     *    :
6a8z_B_1     172:RGFLPCNDHPSDPATFTVRVTVPASASAAASGL----FTTQTERNGLKTLTFTQRVPVPTYALGLIVGPLERRTAPDVQLGTQTVHRRDIYAAGLPAGTT: 267
SecStr          :GGTS B  STTS EEEEEEEEEETT EEEESSE----EEEEEEETTEEEEEEEEEEEE GGG  EEEESEEEEEEEEEEETTEEEEEEEEEETT  TT  :    
ExpBur          :bbbbbbbbbbebebbbbbebbbeeebbbbbbbe----eeeeeeeeeebebbbbbeeebbbbbbbbbbbebeeeeeeebebeeeebebbbbbbeeeeeebe:    

queryA       311:AGHGDYALNVTGPILNFFAGHYDTPYPLPKSDQIGLPDFNAGAMENWGLVTYRENSLLFDPLSSSSSNKERVVTVIAHELAHQWFGNLVTIEWWNDLWLN: 410
                :   *  *       *    *    ***        *      * *  ** *               ** ***     *********  **   * * ** :
6a8z_B_1     268:VPEGETARMLR--VLSDWFG----PYP-DEVYGVALLPVRQLALETAGLTTM-----------PATSNRERVRL---HELAHQWFGDQVTLADWADTWLS: 346
SecStr          :  TTHHHHHHH--HHHHHHS----S S-SSEE EEEESS S  B  TTSEEE-----------EGGG  HHHHH---HHHHHHHBTTTB BSSGGGTHHH:    
ExpBur          :beeebbbebbe--bbbebbb----ebb-bebbbbbbbebeeebbbbbbbbbb-----------bbebbeeebbb---bbbbbbbbbbebbbebbbbbbbb:    
Contact         :                                                                             b   b                  

queryA       411:EGFASYVEYLGADYAEPTWNLKDLMVLNDVYRVMAVDALASSHPLSTPASEINTPAQISELFDAISYSKGASVLRMLSSFLSEDVFKQGLASYLHTF: 507
                :**** * * *    **        *   * *    *     * **     *        * ***  *  **  *  *        * * * **  **:
6a8z_B_1     347:EGFATYAELL---WAESQGEDGQAMA-ADWYARLSV---LPSRPLRATREE--------EIFDASAYFRGALALHALRLKVGDAAFGQFLHSYVKTF: 428
SecStr          :HHHHHHHHHH---HHHHTT  HHHHH-HHHHHHHHT---S    SS  SGG--------GTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT:    
ExpBur          :bbbbbbbbbb---bbeeeeeebbebb-eebeeebee---eeebebebebee--------ebbeebbebbbbbbbbbbbeeeeeeebbebbeebbeeb:    
Contact         :b                                                                 b                                 


Input Residue Numbers for Focused Sites

ex) 2,15,123