Protein Model on 5ni4_C_1_B_1 (TEMPLATE: 5ni4 )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(AMPN_HUMAN) C 1 (C) polymer(polypeptide(L)) [608 aa] Leukotriene A-4 hydrolase :LKHA4_HUMAN
2 b B 1 (B) polymer(polypeptide(L)) [608 aa] Leukotriene A-4 hydrolase :LKHA4_HUMAN 451S(E) 452S(T) 454P 461E(D) 464T 465P(D) (identity: 33.3 %/29.8 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:5ni4_C_1 identity=29.8%
queryA       210:TQMQAADARKSFPCFDEPAMKAEFNITLIHPKDLTALSNMLPKGPSTPLPEDPNWNVTEFHTTPKMSTYLLAFIVSEFDYVEKQASNGVLIRIWARPSAI: 309
                : * **   *   ** * *  *         ** * **      *  ** ****      *        ** *  *        *     *   *      :
5ni4_C_1     140:SQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSAIRDG-ETPDPEDPSRKIYKFIQKVPIPCYLIALVVGALE--SRQIGPRTLV--WSEKEQV: 234
SecStr          :E  TTTTGGGTS B  STT  EEEEEEEEEETTSEEEESSEEEE-EEE TT TTEEEEEEEEEEEE GGG  EEEES E--EEEEETTEEE--EE TTTH:    
ExpBur          :bbbbbbbbbbbbbbbbbbebbbebebebbbbeebebbbbbeeee-eeebeeeeebebbebebebebbbbbbbbbbbebe--eeeebebbbb--bbbeeeb:    

queryA       310:AAGHGDYALNVTGPILNFFAGHYDTPYPLPKSDQIGLP-DFNAGAMENWGLVTYRENSLLFDPLSSSSSNKERVVTVIAHELAHQWFGNLVTIEWWNDLW: 408
                :      *    *   *   *     **     *   **  *  * * *  * *     **                *****  * * *****   *   *:
5ni4_C_1     235:EKSA--YEFSETESMLKI-AEDLGGPYVWGQYDLLVLPPSFPYGGMANPCL-TFVTPTLL--------AGDKSLSNVIAHEISHSWTGNLVTNKTWDHFW: 322
SecStr          :HHHH--HHTTTHHHHHHH-HHHHH    SS  EEEE  TT SSSEE  TTE-EEE GGG -------- SSSTTTHHHHHHHHTTTBTTTEEESSGGGHH:    
ExpBur          :eebb--ebbebbbebbeb-beebbbebebeebbbbbbbebbbbbbbbbbbb-bbbbbbbe--------eeeebbbebbbbbbbbbbbbbbbbbebbbbbb:    

queryA       409:LNEGFASYVE--YLGADYAEPTWNLKDLMVLNDVYRVMAVDALASSHPLSTPASEINTPAQISELFDAISYSKGASVLRMLSSFL-SEDVFKQGLASYLH: 505
                :****   * *    *    *       *           *      **         *            * **   *  *   *     *   *  *  :
5ni4_C_1     323:LNEGHTVYLERHICGRLFGEKFRHFNALGGWGELQN--SVKTFGETHPFTKLVVDL-TDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVE: 419
SecStr          :HHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHH--HHHHH TT GGGSSS   -TT  HHHH  SHHHHHHHHHHHHHHHHHT HHHHHHHHHHHHH:    
ExpBur          :bbbbbbbbbbbbbbbeeeeeebbbbbbbebbbebee--bbeeeeeeeebbebbbeb-eeebbbebebebbbbbbbbbbbbbbeebebeeebbebbeebbe:    
Contact         :                                            bb b      b  bb                                         

queryA       506:TFAYQN: 511
                : * *  :
5ni4_C_1     420:KFSYKS: 425
SecStr          :HHTTEE:    
ExpBur          :ebbeeb:    


Input Residue Numbers for Focused Sites

ex) 2,15,123