Protein Model on 5lds_B_1_Y_1 (TEMPLATE: 5lds )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(AMPN_HUMAN) B 1 (B) polymer(polypeptide(L)) [898 aa] Aminopeptidase N :AMPN_PIG
2 b Y 1 (B) non-polymer(ZN) ZINC ION 388H 392H 411E 477Y (identity: 100.0 %/79.5 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:5lds_B_1 identity=79.5%
queryA        67:QSKAWNRYRLPNTLKPDSYRVTLRPYLTPNDRGLYVFKGSSTVRFTCKEATDVIIIHSKKLNYTLSQGHRVVLRGVGGSQPPDIDKTELVEPTEYLVVHL: 166
                :*** ******* ** **** **********  *** *** * *** * * **************    * ******* ** * ** ***** ********:
5lds_B_1      45:QSKPWNRYRLPTTLLPDSYNVTLRPYLTPNADGLYIFKGKSIVRFICQEPTDVIIIHSKKLNYTXXX-HMVVLRGVGDSQVPEIDRTELVELTEYLVVHL: 143
SecStr          :  SGGGSSS  SSEEEEEEEEEEEE  S  TTS  EEEEEEEEEEEESS EEEEEEE  S EE ----  EEEEE TT     EEEEEEETTTTEEEEEE:    
ExpBur          :eeeebeeeebeebbebebbebebbbebeeeeeeebbbebebebebebeeebebbbbbbeebebe----eebebeeeeebeebebeebeebeebbbbbbbb:    

queryA       167:KGSLVKDSQYEMDSEFEGELADDLAGFYRSEYMEGNVRKVVATTQMQAADARKSFPCFDEPAMKAEFNITLIHPKDLTALSNMLPKGPSTPLPEDPNWNV: 266
                :****     *** *** ******************** ** ******  **************** ********  ******* *** **** ***** *:
5lds_B_1     144:KGSLQPGHMYEMESEFQGELADDLAGFYRSEYMEGNVKKVLATTQMQSTDARKSFPCFDEPAMKATFNITLIHPNNLTALSNMPPKGSSTPLAEDPNWSV: 243
SecStr          :EEEE TT EEEEEEEEEEE  SSSSEEEEEEEEETTEEEEEEEEE TTTTGGGTS B   TTS BEEEEEEEEETTSEEEESS BSS  EE TT TTEEE:    
ExpBur          :eeebeeeeebebebebebebbeebbbbbbbebeeeeeebbbbbbbbbbbbbbbbbbbbbbbebbbebebbbbbeeebebbbbbeeeeeeeebeeeeebbe:    

queryA       267:TEFHTTPKMSTYLLAFIVSEFDYVEKQASNGVLIRIWARPSAIAAGHGDYALNVTGPILNFFAGHYDTPYPLPKSDQIGLPDFNAGAMENWGLVTYRENS: 366
                :*** *** ******* *****  *   * *********** *** *** ************** ** * ********* ******************** :
5lds_B_1     244:TEFETTPVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGMYALNVTGPILNFFANHYNTSYPLPKSDQIALPDFNAGAMENWGLVTYRENA: 343
SecStr          :EEB    SB GGG  EEEE  EEEEEE TTS EEEEEE HHHHHTTTTHHHHHHHHHHHHHHHHHTT    SSEEEEEEESS SSSEE  TTEEEEEGGG:    
ExpBur          :bebeebbebbbbbbbbbbbebeeeeeebeeebebebbbbbebbeeebbebbbebbbebbbbbbebbebebebebbbbbbbbbbebebbbbbbbbbbbbbb:    

queryA       367:LLFDPLSSSSSNKERVVTVIAHELAHQWFGNLVTIEWWNDLWLNEGFASYVEYLGADYAEPTWNLKDLMVLNDVYRVMAVDALASSHPLSTPASEINTPA: 466
                :***** *** ************************  ********************* ********** *  ***************** *** * ****:
5lds_B_1     344:LLFDPQSSSISNKERVVTVIAHELAHQWFGNLVTLAWWNDLWLNEGFASYVEYLGADHAEPTWNLKDLIVPGDVYRVMAVDALASSHPLTTPAEEVNTPA: 443
SecStr          :T   TTTS HHHHHHHHHHHHHHHHTTTBTTTEEESSGGGTHHHHHHHHHHHHHHHHHH GGG GGGGHHHHTHHHHHHHHTSTT   SS  GGG  SHH:    
ExpBur          :bbbbeeebbbebebebbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbeeebeebebeebbbbebbbebbebbbbbebbbbbbeeeebebbe:    
Contact         :                     b   b                  b                                                       

queryA       467:QISELFDAISYSKGASVLRMLSSFLSEDVFKQGLASYLHTFAYQNTIYLNLWDHLQEAVNNR-SIQLPTTVRDIMNRWTLQMGFPVITVDTSTGTLSQEH: 565
                :**** ** ********* **** ** ** ** ******* ****** ** ** *** **    ** ** *** ** *************** **  ** *:
5lds_B_1     444:QISEMFDSISYSKGASVIRMLSNFLTEDLFKEGLASYLHAFAYQNTTYLDLWEHLQKAVDAQTSIRLPDTVRAIMDRWTLQMGFPVITVDTKTGNISQKH: 543
SecStr          :HHHHTSSHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHTTEEE HHHHHHHHHHHHHT SS   SS HHHHHHHHHSS S EEEEEETTTTEEEEEE:    
ExpBur          :ebbbbbebbbbbbbbbbbbbbbebbebebbeebbbebbeebeeeebebeebbebbeebbeeeeeeeeeeebeebbbbbbebbbbbbbebebeebebebeb:    
Contact         :          b                                                                                         

queryA       566:FLLDPDSNVTRPSEFNYVWIVPITSIRDGRQQQDYWLIDV-RAQNDLFSTSGNEWVLLNLNVTGYYRVNYDEENWRKIQTQLQRDHSAIPVINRAQIIND: 664
                :****  ***** * * * ***** **  *  *  *** **  ****** *    ***** *****  ***** *** ** ***   * ******** * *:
5lds_B_1     544:FLLDSESNVTRSSAFDYLWIVPISSIKNGVMQDHYWLRDVSQAQNDLFKTASDDWVLLNVNVTGYFQVNYDEDNWRMIQHQLQTNLSVIPVINRAQVIYD: 643
SecStr          :  S SS    S  TTTT   EEE EEETTEE   EEE SSSEEE GGG   TT  EEESGGG SS EEEE HHHHHHHHHHHHHHGGGS HHHHHHHHHH:    
ExpBur          :bebbeebeeeeebeeebebbbbbbbbbeeeeeeebbbeeeeeeeeebbebeeeebbbbbbebbbbbbbbbbeebbeebeebbeeebeebeebbbbbbbbb:    

queryA       665:AFNLASAHKVPVTLALNNTLFLIEERQYMPWEAALSSLSYFKLMFDRSEVYGPMKNYLKKQVTPLFIHFRNNTNNWREIPENLMDQYSEVNAISTACSNG: 764
                : **** ** ******* *****  *  **** ********* ************* ** *** *** **   * ** * ********** **********:
5lds_B_1     644:SFNLATAHMVPVTLALDNTLFLNGEKEYMPWQAALSSLSYFSLMFDRSEVYGPMKKYLRKQVEPLFQHFETLTKNWTERPENLMDQYSEINAISTACSNG: 743
SecStr          :HHHHHHTTSS HHHHHHTTGGGGG  SHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHTTTTTS  SSHHHHHHHHHHHHHHHHTT:    
ExpBur          :bbebbbbeebebebbbebbebbeebeebbbbbbbbebbebbebbbbeeebeeebeebbeebbeebbeebeeebeebeebbeebbebbbbbbbbebbbebe:    

queryA       765:VPECEEMVSGLFKQWMENPNNNPIHPNLRSTVYCNAIAQGGEEEWDFAWEQFRNATLVNEADKLRAALACSKELWILNRYLSYTLNPDLIRKQDATSTII: 864
                : * **     ** ***  * *********** *********   ***** *   * ********* ***** * * ***** ***************** :
5lds_B_1     744:LPQCENLAKTLFDQWMSDPENNPIHPNLRSTIYCNAIAQGGQDQWDFAWGQLQQAQLVNEADKLRSALACSNEVWLLNRYLGYTLNPDLIRKQDATSTIN: 843
SecStr          : HHHHHHHHHHHHHHHHSTTS  S HHHHHHHHHHHHHHS HHHHHHHHHHHHT SSHHHHHHHHHHHTT S HHHHHHHHHHTT TTTS GGGHHHHHH:    
ExpBur          :beebeebbeebbeebeeeeeeeebebbbbebbbebbbeeeeeebbebbbebbeeeebbbbbbbbbebbbbbeeeebbeebbeebbeeeebeebbbbebbb:    

queryA       865:SITNNVIGQGLVWDFVQSNWKKLFNDYGGGSFSFSNLIQAVTRRFSTEYELQQLEQFKKDNEETGFGSGTRALEQALEKTKANIKWVKENKEVVLQWFTE: 964
                :**  ***** * ************ ************** ****** * ********** *   ******************************* ** *:
5lds_B_1     844:SIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFSSEFELQQLEQFKKNNMDVGFGSGTRALEQALEKTKANIKWVKENKEVVLNWFIE: 943
SecStr          :HHHHSTTHHHHHHHHHHHTHHHHHHHHTTSSSHHHHHHHHHHTT  SHHHHHHHHHHHHHTTTT  GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :ebbebeebbebbbebbeeebeebeeebbeebebbeebbebbbebbbeeebbeebeebeeeeeeebbbbbeebbebbbbebebbbebbeebeeebbebbee:    

queryA       965:NS: 966
                : *:
5lds_B_1     944:HS: 945
SecStr          :H :    
ExpBur          :ee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123