Protein Model on 5cu5_A_1_C_1 (TEMPLATE: 5cu5 )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(AMPN_HUMAN) A 1 (A) polymer(polypeptide(L)) [871 aa] Endoplasmic reticulum aminopeptidase 2 :ERAP2_HUMAN
2 b C 1 (C) branched(oligosaccharide) alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 90R(H) 92Y(N) 239H(R) 240P(E) (identity: 0.0 %/36.0 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:5cu5_A_1 identity=36.0%
queryA        71:WNRYRLPNTLKPDSYRVTLRPYLTPNDRGLYVFKGSSTVRFTCKEATDVIIIHSKKL---NYTLSQGHRVVLRGVGGSQP----PDIDKTELVEPTEYLV: 163
                :*   ***    *  *     * **  *     *  *         **  ** *** *   * **           *        *      *  * * * :
5cu5_A_1      64:WQELRLPSVVIPLHYDLFVHPNLTSLD-----FVASEKIEVLVSNATQFIILHSKDLEITNATLQSEEXXXYMKPGKELKVLSYPAHEQIALLVP-EKLT: 157
SecStr          :   SS  SSEEEEEEEEEEEEETTTTE-----EEEEEEEEEEE S EEEEEEE  S EEEEEEEEE  ---   S EE EEEEEGGGTEEEEEEE-EEE :    
ExpBur          :eeeeebbeebebebbebbbebebeeee-----bebebebebebeeebeebbbbbeebeeeebebebee---eeeeeeebeebebeeebbbbbebe-eebe:    
Contact         :                   b b                                                                              

queryA       164:VHLKGSLVKDSQYEMDSEFEGELADDLAGFYRSEYME-GNVRKVVATTQMQAADARKSFPCFDEPAMKAEFNITLIHPKDLTALSNMLPKGPSTPLP---: 259
                : ***        *     *   * *   *** * *   *      * *      **  *******  ** * *         ***** **     *    :
5cu5_A_1     158:PHLK--------YYVAMDFQAKLGDGFEGFYKSTYRTLGGETRILAVTDFEPTQARMAFPCFDEPLFKANFSIKIRRESRHIALSNM-PKVKTIELEGGL: 248
SecStr          :TT E--------EEEEEEEEEE BSSSSEEEEEEEE TTS EEEEEEEE TTTTGGGTS B  STTS BEEEEEEEE TT EEEESS- EEEEEE TTS :    
ExpBur          :eeee--------bbbebebebebbeebebbbebebebeeeeeeebbbbbbbbbbbbbbbbbbbbbebbbebbbebebeeebebbbbb-eeeeeeebeeee:    
Contact         :                                                                            bb                   b b

queryA       260:-EDPNWNVTEFHTTPKMSTYLLAFIVSEFDYVEKQASNGVLIRIWARPSAIAAGHGDYALNVTGPILNFFAGHYDTPYPLPKSDQIGLPDFNAGAMENWG: 358
                : **       * ** ****** * **  *       * **   * * *      *  ***      * *     *  *** * * *  ***  *******:
5cu5_A_1     249:LED------HFETTVKMSTYLVAYIVCDFHSLSGFTSSGVKVSIYASPDKRNQTH--YALQASLKLLDFYEKYFDIYYPLSKLDLIAIPDFAPGAMENWG: 340
SecStr          :EEE------EE    SB GGG  EEEE  EEEEEE TT  EEEEEE GGGGGGGH--HHHHHHHHHHHHHHHHHT    SSEEEEEEESS SSSEE  TT:    
ExpBur          :bbb------bbeebeebbbbbbbbbbbbbeebebebeeebebbbbbbbebeebbe--bbbebbeebbebbbebbebebebebbbbbbbbbbbeebbbbbb:    

queryA       359:LVTYRENSLLFDPLSSSSSNKERVVTVIAHELAHQWFGNLVTIEWWNDLWLNEGFASYVEYLGADYAEPTWNLKDLMVLNDVYRVMAVDALASSHPLSTP: 458
                :* **** ******  ** * *  *  **************** ***** ** **** * *        *     *   **    *   * * ** * * *:
5cu5_A_1     341:LITYRETSLLFDPKTSSASDKLWVTRVIAHELAHQWFGNLVTMEWWNDIWLKEGFAKYMELIAVNATYPELQFDDYF-LNVCFEVITKDSLNSSRPISKP: 439
SecStr          :EEEEEGGGT   TTT  HHHHHHHHHHHHHHHHHTTBTTTEEESSGGGTHHHHHHHHHHHHHHHHHH GGG HHHHH-HHHHHHHHHHHTSTT   SS  :    
ExpBur          :bbbbbbebbbbeeebbbbebebebbbbbbbbbbbbbbbbbbbbebbebbbbbbbbbbbbbbbbbeebbeebebebeb-bebbbebbeebbbebbbbbbee:    

queryA       459:ASEINTPAQISELFDAISYSKGASVLRMLSSFLSEDVFKQGLASYLHTFAYQNTIYLNLWDHLQEAVNNRSIQLPTT--------------------VRD: 538
                :*    ** ** * **  ** ***  * **  ** *  *  *   **  * * *     **  *                                  *  :
5cu5_A_1     440:A---ETPTQIQEMFDEVSYNKGACILNMLKDFLGEEKFQKGIIQYLKKFSYRNAKNDDLWSSLSNSXXXXXXXXXXXXXXXXXXXXXXXXXLGENAEVKE: 536
SecStr          : --- SHHHHHHT SSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEE HHHHHHHHH  -------------------------  S   HHH:    
ExpBur          :b---eeeeebbbbbbebbbbbbbbbbbbbeeebeeeebbebbbebbeebeeebbebeebbebbbee-------------------------eeeeeebee:    

queryA       539:IMNRWTLQMGFPVITV--DTSTGTLSQEHFL--LDPDSNVTRPSEFNYVWIVPITSIRDGRQQQDYWLIDVRAQNDLFSTSGNEWVLLNLNVTGYYRVNY: 634
                : *  **** * *   *  *     * ** **                * *  * *                     *       **  *    *** * *:
5cu5_A_1     537:MMTTWTLQKGIPLLVVKQDGCSLRLQQERFLQGVFXXXXXXXXXQERYLWHIPLTYSTSSSNVIHRHILKSKT-DTLDLPEKTSWVKFNVDSNGYYIVHY: 635
SecStr          :HHHHHHSS S EEEEEEEETTEEEEEEEE  SS  --------- TT      EEEEESS    EEE   SSE-EEEE SS  S EEESGGG SSSEEEE:    
ExpBur          :bbebbbebebbbbbbbeeeeeebebebebbbbeee---------eeebebbbbbbbbbeeeeeeeeeebeeee-eebebeeebebbbbbbebebbbbbbb:    

queryA       635:DEENWRKIQTQLQRDHSAIPVINRAQIINDAFNLASAHKVPVTLALNNTLFLIEERQYMPWEAALSSLSYFKLMFDR---SEVYGPMKNYLKKQVTPLFI: 731
                :    *    ***   *       *   * * * *  *       **  *  *  *         ** *  *  * **   *      * **     *   :
5cu5_A_1     636:EGHGWDQLITQLNQNHTLLRPKDRVGLIHDVFQLVGAGRLTLDKALDMTYYLQHETSSPALLEGLSYLESFYHMMDRRNISDISENLKRYLLQYFKPVI-: 734
SecStr          :TTTHHHHHHHHHHHHGGGS HHHHHHHHHHHHHHHHTTSS HHHHHHHTTGGGT   HHHHHHHHHHHHHHHHHHHHTT HHHHHHHHHHHHHTTHHHH-:    
ExpBur          :eeebbeebbebbeeebeebbebbbbbbbbbbbbbbebeebebeebbebbebbeebeebbbbbbbbebbbebbebbebeebeebbebbbebbbeebeebb-:    

queryA       732:HFRNNTNNWREIPENLMDQYSEVNAISTACSNGVPECEEMVSGLFKQWMENPNNNPIHPNLRSTVYCNAIAQGGEEEWDFAWEQFRNATLVNEADKLRAA: 831
                :        *        *          **      *      ** ****      *       **           *    **        *  *   *:
5cu5_A_1     735:----DRQSWSD-KGSVWDRMLRSALLKLACDLNHAPCIQKAAELFSQWMESSGKLNIPTDVLKIVY--SVGAQTTAGWNYLLEQYELSMSSAEQNKILYA: 827
SecStr          :----HT  SSS- S HHHHHHHHHHHHHHHHTT HHHHHHHHHHHHHHHHHTS S   GGGHHHHH--HHHTTSHHHHHHHHHHHHH S HHHHHHHHHH:    
ExpBur          :----eebeebe-eeebbebbbbeebbebbbbbeeeebeeebeebbeebeebeeeeebbbbbbebbb--bbbbeeeebbebbbebbeebbbbbbeebbbbb:    

queryA       832:LACSKELWILNRYLSYTLNPDLIRKQDATSTIISITNNVIGQGLVWDFVQSNWKKLFNDYGGGSFSFSNLIQAVTRRFSTEYELQQLEQFKKDNEETGFG: 931
                :*  **    *            *  *        *     ** * ****  **  *      **      *   *  **    **    *    *    *:
5cu5_A_1     828:LSTSKHQEKLLKLIELGMEGKVIKTQNLAALLHAIARRPKGQQLAWDFVRENWTHLLKKFDLGSYDIRMIISGTTAHFSSKDKLQEVKLFFESLEAQ--G: 925
SecStr          :HTT S HHHHHHHHHHHHH SSS GGGHHHHHHHHHHSTTTHHHHHHHHHHTHHHHHHHS TTSHHHHHHHHHHHTT  SHHHHHHHHHHHHHTTTT--T:    
ExpBur          :bbbbeeeebbeebbebbbebeebebbbbbebbebbbeeeebbebbbebbeeebeebeeebebbbebbbebbebbbbbbbbeebbeebeebbeebeee--b:    

queryA       932:SGTRALEQALEKTKANIKWVKENKEVVLQWFTENSK: 967
                :*        **    ****   *      *   *  :
5cu5_A_1     926:SHLDIFQTVLETITKNIKWLEKNLPTLRTWLMVNTR: 961
SecStr          :   THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH :    
ExpBur          :eebebbebbbbbbeebbebbeebbeebeebbeeeee:

Input Residue Numbers for Focused Sites

ex) 2,15,123