[pdbjlvh2]Protein Model on 4xnd_A_1_G

Protein Model on 4xnd_A_1_G_1 (TEMPLATE: 4xnd )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(AMPN_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [866 aa]	Aminopeptidase N :AMPN_ECOLI
2	b		G 1 (A)	non-polymer(NA)	SODIUM ION	430N 433D(T) 478S(E) (identity: 33.3 %/30.3 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:4xnd_A_1 identity=30.3%

queryA       349:FNAGAMENWGLVTYRENSLLFDPLSSSSSNKERVVTVIAHELAHQWFGNLVTIEWWNDLWLNEGFASYVEY-----LGADYAEPTWNLKDLMVLNDVYRV: 443
                :** ***** **        *                ** **  * * ** **   *  * * **            **        *      *      :
4xnd_A_1     254:FNMGAMENKGLNIFNSKYVLARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDLGSRAVNRINNVRTMRGLQ-----: 348
SecStr          : SSSEE  TTEEEEEGGGT   TTT  HHHHHHHHHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHTH-----:    
ExpBur          :bbeebbbbbbbbbbbbebbbbeeebbbbebbebbbebbbbbbbbbbbbbbbbbebbbbbbbbbbbbbbbbbbbbbeeeeebbebbebbbebebeb-----:    
Contact         :                                                                                      b  b          

queryA       444:MAVDALASSHPLSTPASEINTPAQISELFDAISYSKGASVLRMLSSFLSEDVFKQGLASYLHTFAYQNTIYLNLWDHLQEAVNNRSIQLPTTVRDIMNRW: 543
                : * **    **                      * *** * **    * *  *  *   *   *           *  *         *         **:
4xnd_A_1     349:FAEDASPMAHPIRP-----DMVIEMNNFYTLTVYEKGAEVIRMIHTLLGEENFQKGMQLY---FERHDGSAATCDDFVQAMEDASNVDLSH-----FRRW: 435
SecStr          :HHHHHSTT   SS -----SEES GGGGS HHHHHHHHHHHHHHHHHH HHHHHHHHHHH---HHHHTTEEE HHHHHHHHHHHH    TT-----TTHH:    
ExpBur          :bbbbebbbbbbbbb-----eebeebbbbbbebbbebbbbbbbbbbebbeeeebbebbebb---beebeeeebbbeebbebbbebbeeebee-----bbeb:    
Contact         :                                  b                                                                 

queryA       544:TLQMGFPVITV: 554
                :  * * *  **:
4xnd_A_1     436:YSQSGTPIVTV: 446
SecStr          :HH  S  EEEE:    
ExpBur          :bebbbbbbbbb:

Protein Model on 4xnd_A_1_G_1 (TEMPLATE: 4xnd )

Input Residue Numbers for Focused Sites