Protein Model on 4wz9_A_1_C_1 (TEMPLATE: 4wz9 )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(AMPN_HUMAN) A 1 (A) polymer(polypeptide(L)) [882 aa] AGAP004809-PA :Q7Q2T8_ANOGA
2 b C 1 (M) polymer(polypeptide(L)) [5 aa] ALA-ALA-ALA-LYS-ALA 213Q(E) 351A 352G 353A 354M 355E 363R 388H 389E 392H 411E 477Y (identity: 91.7 %/36.9 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:4wz9_A_1 identity=36.9%
queryA        73:RYRLPNTLKPDSYRVTLRPYLTPNDRGLYVFKGSSTVRFTCKEATDVIIIHSKKLNYTLSQGHRVVL-RGVGGSQPPDIDKTELVEPTEYLVVHLKGSLV: 171
                :***** *  *  *   **     * *    * *          ***    *   *    *      *  ** *      *       *            :
4wz9_A_1      45:RYRLPTTSIPIHYDLHLRTEIHRNER---TFTGTVGIQLQVVQATDKLVMHNRGL--VMSSAKVSSLPNGVTGAPTLIGDVQYSTDTTFEHITFTSPTIL: 139
SecStr          :S S  SSEEEEEEEEEEEE GGGT  ---EEEEEEEEEEEESS EEEEEEE SS --EEEEEEEEEESSSSSS  EEEEE EEEEETTTTEEEEEEEEEE:    
ExpBur          :ebebeebbebebbebebebbbeeeee---ebebebbbbbebeeebeebbbbbeeb--ebeebebbbbeeeeeeeeeeebebeeeeeeebbbbebebeeeb:    

queryA       172:KDSQYEMDSEFEGELADDLAGFYRSEYMEGN-VRKVVATTQMQAADARKSFPCFDEPAMKAEFNITLIHPKDLTALSNMLPKGPSTPLPEDPNWNVTEFH: 270
                :    *     * * **    *** * *   *  *   ****     **  *** ***  ** *     *     * *** *    *    *     * * :
4wz9_A_1     140:QPGTYLLEVAFQGRLATNDDGFYVSSYVADNGERRYLATTQFESTSARMAFPCYDEPGLKATFTVSITHSLSYKAISNM-PQKTTTDIETD--MRTTFFE: 236
SecStr          : SSEEEEEEEEEEE BSSSSSEEEEEEE TTS EEEEEEE  TTT GGGTS B   TTS BEEEEEEEEETTSEEEESS- EEEEEEETTT--EEEEEE :    
ExpBur          :eeebbbbebbbebebbeeeebbbbbbbebeeeeeeebbbbbbbbbbbbbbbbbbbbbeebbebebbbbbbeebebbbbb-eeeeeeeeeee--bebbebe:    
Contact         :                                          b                                                         

queryA       271:TTPKMSTYLLAFIVSEFDYVEKQASNGVLIRIWARPSAIAAGHGDYALNVTGPILNFFAGHYDTPYP--LPKSDQIGLPDFNAGAMENWGLVTYRENSLL: 368
                : ** ******** ** *      *      *   ** *        **     **     *   **    ** ***  *** **************  **:
4wz9_A_1     237:KTPAMSTYLLAFVVSDFQLRLSGAQ-----RVYVRPNAF--NEATFALEAGVKILKVLDDHLGIPYDTYMPKLDQIAIPDFAAGAMENWGLVTYREQALL: 329
SecStr          :   SB GGG  EEEE  EEEEETTE-----EEEE GGGG--GG HHHHHHHHHHHHHHHHHHTS GGGT S EEEEEESS SSSEE  TTEEEEEGGGT :    
ExpBur          :ebeebbbbbbbbbbbebeeeeeeeb-----ebbbbeebe--ebbebbbebbeebbebbbebbebebeeebebbbbbbbbebeeebbbbbbbbbbebebbb:    
Contact         :                                                                                  bbbbb       b     

queryA       369:FDPLSSSSSNKERVVTVIAHELAHQWFGNLVTIEWWNDLWLNEGFASYVEYLGADYAEPTWNLKDLMVLNDVYRVMAVDALASSHPLSTPASEINTPAQI: 468
                :* *  *    *  * * **** *********  ***   *******   *    * * *      *         *  *  **  *    *    **  *:
4wz9_A_1     330:FNPAVSTYRGKTNVATTIAHEYAHQWFGNLVSPEWWEYIWLNEGFATLYEFYALDMAYPGQEYWELFNQQVIQYAMGQDGQASTRPMNWNAA---TPGEI: 426
SecStr          :  TTT  HHHHHHHHHHHHHHHHHTTBTTTEEESSGGGTHHHHHHHHHHHHHHHHHHSTTS GGGHHHHHTHHHHHHHHTSTT   SS    ---SHHHH:    
ExpBur          :beeebbbbeeebebbbbbbbbbbbbbbbbbbbbebbeebbbbbbbbbbbebbbbeebbeeeebbbbbbbebbbebbbebbeeebbbbbeebb---eeeeb:    
Contact         :                   bb  b                  b                                                         

queryA       469:SELFDAISYSKGASVLRMLSSFLSEDVFKQGLASYLHTFAYQNTIYLNLWDHLQEAVNNRSIQLP--TTVRDIMNRWTLQMGFPVITV----DTSTGTLS: 562
                :* ***   * *  *** *    *  *  * **  **   * *      *   ** *       **   **  **  **   * **  *    **     *:
4wz9_A_1     427:SALFDRVAYDKSGSVLNMMRHVLGDDNWKAGLKAYLTDRALQGAVDEQLYAGLQSAIEGKGV-LPNGVTVAQIMRTWTNEAGYPVLNVRRSYDTGDVIIS: 525
SecStr          :HHTSSTTTTHHHHHHHHHHHHHH HHHHHHHHHHHHHHHTTEEE HHHHHHHHHHTTTTS  -S TT  HHHHHHHHHSSSS EEEEEE  TTTTEEEEE:    
ExpBur          :eebeeebbebbbbbbbbbbbbbbeeeebeebbeebbeebbeebbebeebbebbbebbeeeee-beeeeebbebbebbbeebbbbbbebebebeeeebebe:    
Contact         :        b                                                                                           

queryA       563:QEHFLLD---PDSNVTRPSEFNYVWIVPITSIRDGRQQ----QDYWLIDVRAQNDLFSTSGNEWVLLNLNVTGYYRVNYDEENWRKIQTQLQRDHSAIPV: 655
                :** *  *   *  *          *  *               *       *         ***   *    ********* **  *   *      *  :
4wz9_A_1     526:QERFYNDRKVPNTN---------IWMIPYNYVHQAKADFNEFDDFQWLATKAARIETTVPANEWIVFNKQQVGYYRVNYDEHNWELITNALHENWASIHR: 616
SecStr          :EEE  SS       ---------   EEE  EESSS      S  EEE SSEEEEE    TTS EE SGGG SSSEEEE HHHHHHHHHHHHH TTSS H:    
ExpBur          :bebbbbeeeeebeb---------ebbbbbbebbeeeeebeeeeebebbeeeeeebeeebeeebbbbbbbbbbbbbbbbbbeebbeebbebbeeeeeebbe:    

queryA       656:INRAQIINDAFNLASAHKVPVTLALNNTLFLIEERQYMPWEAALSSLSYFKLMFDRSEVYGPMKNYLKKQVTPLFIHFRNNTNNWREIPENLMDQYSEVN: 755
                : **** * **  **         **     *  ** * ** **   * **         *                            *         * :
4wz9_A_1     617:LNRAQLIDDAYWLARSGRLDLRVALRFMTYLRNEREYAPWTAANVALTYFNNRLRGTAEYHNFLIFVDALIEDIYSLLTIDAVS----PDDTLLHKYLVQ: 712
SecStr          :HHHHHHHHHHHHHHHHTSS HHHHHHHHGGGGT   HHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHTTT  S  SS   ----TT  HHHHHHHH:    
ExpBur          :bbbbbbbbbbbbbbebebbebebbbebbebbeebeebbbbbbbeebbebbbeebeebeeeeebeebbeebbeebbebebeebee----eeeebbebbbbb:    

queryA       756:AIST-ACSNGVPECEEMVSGLFKQWMENPNNNP-IHPNLRSTVYCNAIAQGGEEEWDFAWEQFRNATLVNEADKLRAALACSKELWILNRYLSYTL: 849
                : *** *** *   *      * *   *     *  **   *  **       * *         *     *   *   * **     *   *   *:
4wz9_A_1     713:TISTWACSMGYTDCLMKTAALLKA--EASGTGPAVHPDIASVTYCYGMRSALESEFQYLYRKMMNSKNLAERTMLIDSLGCSNNKEFLKAFLTTAL: 806
SecStr          :HHHHHHHHTT HHHHHHHHHHHHH--HHHSSS    GGGHHHHHHTTSTT  HHHHHHHHHHHHH   HHHHHHHHHHHTT S HHHHHHHHHHTS:    
ExpBur          :bbbebbbebebeebeeebeebbeb--beeeeeeebebbbbebbbbbbbbebeeebbeebbeebbebebbebbbbbbebbbbbeeeebbeebbebbb:    


Input Residue Numbers for Focused Sites

ex) 2,15,123