Protein Model on 4pj6_A_1_F_1 (TEMPLATE: 4pj6 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(AMPN_HUMAN) A 1 (A) polymer(polypeptide(L)) [860 aa] Leucyl-cystinyl aminopeptidase :LCAP_HUMAN
2 b F 1 (A) non-polymer(NAG) 2-acetamido-2-deoxy-beta-D-glucopyranose 90R(H) 91P 92Y(N) 94T 239H(R) 240P(D) 264W(L) (identity: 28.6 %/36.4 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:4pj6_A_1 identity=36.4%
queryA        71:WNRYRLPNTLKPDSYRVTLRPYLTPNDRGLYVFKGSSTVRFTCKEATDVIIIHSKKLNYTLSQGHRVVLRGVGGSQPPDIDKTELVEPTEYLVVHLKGSL: 170
                :*   ***    *  *   * * **        * ** *        *  ** **   *       **       **       *         *     *:
4pj6_A_1      10:WAQIRLPTAVVPLRYELSLHPNLTS-----MTFRGSVTISVQALQVTWNIILHSTGHNIS-----RVTFMSXVSSQEKQAEILEYAYHGQIAIVAPE-AL:  98
SecStr          :   SS  SSEEEEEEEEEEEEETTT-----TEEEEEEEEEEEESS EEEEEEE  S EEE-----EEEEE -  S  EE EEEEEGGGTEEEEEEEE-EE:    
ExpBur          :eeeeebbebbebeebebbbebebee-----eebebebebbbebeeebeebbbbbeebeee-----ebbbbe-eeeeeeebeebeeeebbbbbbebee-eb:    
Contact         :                   bbb b                                                                            

queryA       171:VKDSQYEMDSEFEGELADDLAGFYRSEYM-EGNVRKVVATTQMQAADARKSFPCFDEPAMKAEFNITLIHPKDLTALSNMLPKGPSTPLPEDPNWNVTEF: 269
                :     *    *          ***   *  * *  *  * **     **  ******** ** * *  *     ****** **  *  *  *      **:
4pj6_A_1      99:LAGHNYTLKIEYSANISSSYYGFYGFSYTDESNEKKYFAATQFEPLAARSAFPCFDEPAFKATFIIKIIRDEQYTALSNM-PKKSSVVL--DDGLVQDEF: 195
SecStr          : TT EEEEEEEEEEE BSSSSEEEEEEEE TTS EEEEEEEE TTTTHHHHS B  SSS EEEEEEEEEEETTSEEEESS-   EEEE --TTSEEEEEE:    
ExpBur          :beeeebebbbebebebeeebebbbbbebebeeeeebebbbbbbbbbbbbebbbbbbbbebbbbbbbbbbbeeebebbbbb-eeeeeeee--eeebbebeb:    
Contact         :                                                                     bb                       b     

queryA       270:HTTPKMSTYLLAFIVSEFDYVEKQASNGVLIRIWARPSAIAAGHGDYALNVTGPILNFFAGHYDTPYPLPKSDQIGLPDFNAGAMENWGLVTYRENSLLF: 369
                :    ****** **** *      *  ** *  * * *  *   *  ***  *   * **       *** * *    *** ********* * **  ** :
4pj6_A_1     196:SESVKMSTYLVAFIVGEMKNL-SQDVNGTLVSIYAVPEKIGQVH--YALETTVKLLEFFQNYFEIQYPLKKLDLVAIPDFEAGAMENWGLLTFREETLLY: 292
SecStr          :    SEEGGG  EEEE  EEE-EEEETTEEEEEEE GGGGGG H--HHHHHHHHHHHHHHHHH S   SSEEEEEEES TT      SSEEEEEHHHH  :    
ExpBur          :eebeebbbbbbbbbbbbbeee-eeebeebebbbbbbeeebeebe--bbbebbbebbebbbebbebebebebbbbbbbbeeebbebbbbbbbbbebebbeb:    

queryA       370:DPLSSSSSNKERVVTVIAHELAHQWFGNLVTIEWWNDLWLNEGFASYVEYLGADYAEPTWNLKDLMVLNDV----YRVMAVDALASSHPLSTPASEINTP: 465
                :*   **      *   ***************  ************   **            * *    *        *  * * **** *   *     :
4pj6_A_1     293:DSNTSSMADRKLVTKIIAHELAHQWFGNLVTMKWWNDLWLNEGFATFMEYFSLEKI-----FKELSSYEDFLDARFKTMKKDSLNSSHPIS---SSVQSS: 384
SecStr          : TTTS HHHHHHHHHHHHHHHHHHHTTTTEEESSGGGHHHHHHHHHHHHHHHHHHH----- GGG THHHHHHHHHHHHHHHTSTT   SS---    SH:    
ExpBur          :eeeebbbeebbebbbebbbbbbbbbbbbbbbbebbebbbbbbbbbbbbbbbbbeee-----beebbbebebbebbbebbeebbbebbeebe---eebeee:    

queryA       466:AQISELFDAISYSKGASVLRMLSSFLSEDVFKQGLASYLHTFAYQNTIYLNLWDHLQEAVNNRSIQLPTTVRDIMNRWTLQMGFPVITVDTSTGTL--SQ: 563
                : ** * **  ** ** * * **   ******      ***   *       ***   *  *         *   *  **** ***  **      *   *:
4pj6_A_1     385:EQIEEMFDSLSYFKGSSLLLMLKTYLSEDVFQHAVVLYLHNHSYASIQSDDLWDSFNEVTNQ-----TLDVKRMMKTWTLQKGFPLVTVQKKGKELFIQQ: 479
SecStr          :HHHHTT  HHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHTTEEE HHHHHHHHHHHTTT-----SS SHHHHHHHHSSSS BEEEEEEETTEEEEE :    
ExpBur          :eebeebeeebbbbbbbbbbbbbbeebeeeebbebbbebbeebeeeebebbebbebbbeebee-----eeebeebbebbbebbbbbbbbbeeeeeebebeb:    

queryA       564:EHFLLDPDSNVTRPSEFNYVWIVPITSIRDGRQQQDYWLIDV--RAQNDLFSTSGNEWVLLNLNVTGYYRVNYDEENWRKIQTQLQRDHSAIPVINRAQI: 661
                :* * *         *   * *  *      **    *               *    **  * *  *** * *    *     **           **  :
4pj6_A_1     480:ERFFLNM-XXXXXXSDTSYLWHIPLSYVTEGRNYSKYQSVSLLDKKSGVINLTEEVLWVKVNINMNGYYIVHYADDDWEALIHQLKINPYVLSDKDRANL: 578
SecStr          : B     -------        EEEEEEEE SSS EEEEEEEE SSEEEEE SS  SEEEESGGG SS EEEE HHHHHHHHHHHHH GGGS HHHHHHH:    
ExpBur          :ebbebee-------eeeeeebbbbbbbbbbbeeeeeeeeeeebeeeeeebebeeebebbbbbbebebbbbbbbeeebbebbbebbeeebeebebebbbbb:    

queryA       662:INDAFNLASAHKVPVTLALNNTLFLIEERQYMPWEAALSSLSYFKLMFDRSEVYGPMKNYLKKQVTPLFIHFRNN----------TNNWREIPENLMDQY: 751
                :**  * **   ***   *      *  *    *   **       *     *  * *       **  *    *           *   **    *    :
4pj6_A_1     579:INNIFELAGLGKVPLKRAFDLINYLGNENHTAPITEALFQTD---LIYNLLEKLGYM-DLASRLVTRVFKLLQNQIQQQTWTDEGTPSMRELRSALLE--: 672
SecStr          :HHHHHHHHHHTSS HHHHHHHHGGGGG   HHHHHHHHHHHH---HHHHHHHHTT H-HHHHHHHHHHHHHTHHHHHT  SSS S HHHHHHHHHHHH--:    
ExpBur          :bbbbbbbbebeebebebbbebbebbeebeebbbbebbbebbb---ebbbbbbbbeee-ebbeebbebbbebbeebbeebebeeeeebbebebbeebbe--:    

queryA       752:SEVNAISTACSNGVPECEEMVSGLFKQWMENPNNNPIHPNLRSTVYCNAIAQGGEEEWDFAWEQFRNATLVNEADKLRAALACSKELWILNRYLSYTLNP: 851
                :        **      *      **  **              **            * *            *  *   *** *     *       ** :
4pj6_A_1     673:-------FACTHNLGNCSTTAMKLFDDWMASNGTQSLPTDVMTTVF--KVGAKTDKGWSFLLGKYISIGSEAEKNKILEALASSEDVRKLYWLMKSSLNG: 763
SecStr          :-------HHHHTT TTHHHHHHHHHHHHHHTTT S   GGGHHHHH--HHHTTSHHHHHHHHHHHHH   HHHHHHHHHHHTT S HHHHHHHHHHHHTT:    
ExpBur          :-------bbbebebeebbeebeeebeebbeeeeeeebebbbbbbbb--bbbbeeeebbebbbebbeeeeebeebebbbebbbbbeeeebbeebbebbbee:    

queryA       852:DLIRKQDATSTIISITNNVIGQGLVWDFVQSNWKKLFNDYGGGSFSFSNLIQAVTRRFSTEYELQQLEQFKKDNEETGFGSGTRALEQALEKTKANIKWV: 951
                :*  * *     *        *  * ****  ** **      **    *     *  ***   *     *     *  *    *    ***    ** * :
4pj6_A_1     764:DNFRTQKLSFIIRTVGRHFPGHLLAWDFVKENWNKLVQKFPLGSYTIQNIVAGSTYLFSTKTHLSEVQAFFENQSEATF--RLRCVQEALEVIQLNIQWM: 861
SecStr          :SSS GGGHHHHHHHHHHSGGGHHHHHHHHHHTHHHHHHHS TTSHHHHHHHHHHHTT  SHHHHHHHHHHHHTT HHHH--TSHHHHHHHHHHHHHHHHH:    
ExpBur          :eebebebbbbbbebbbebeebbeebbebbeeebeebeeebeeeeeebebbbebbbebbbeeebbeebeebbeeeeeebb--eeebbebbbbebebbbebb:    

queryA       952:KENKEVVLQWF: 962
                :  *      * :
4pj6_A_1     862:EKNLKSLTWWL: 872
SecStr          :HHHTGGGGG  :    
ExpBur          :eebbeebeebb:    


Input Residue Numbers for Focused Sites

ex) 2,15,123