Protein Model on 4p8q_B_1_F_1 (TEMPLATE: 4p8q )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(AMPN_HUMAN) B 1 (B) polymer(polypeptide(L)) [848 aa] Leucyl-cystinyl aminopeptidase :LCAP_HUMAN
2 b F 1 (F) branched(oligosaccharide) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 173D(G) 175Q(N) (identity: 0.0 %/35.7 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:4p8q_B_1 identity=35.7%
queryA        71:WNRYRLPNTLKPDSYRVTLRPYLTPNDRGLYVFKGSSTVRFTCKEATDVIIIHSKKLNYTLSQGHRVVLRGVGGSQPPDIDKTELVEPTEY--LVVHLKG: 168
                :*   ***    *  *   * * **        * ** *        *  ** **         **                  *  *             :
4p8q_B_1      10:WAQIRLPTAVVPLRYELSLHPNLTS-----MTFRGSVTISVQALQVTWNIILHST--------GHNISRVTFMXXXXXXEKQAEILEYAYHGQIAIVAPE:  96
SecStr          :   SS  SSEEEEEEEEEEEEETTT-----TEEEEEEEEEEEESS EEEEEEE  --------S EEEEEEE ------ EE EEEEETTTTEEEEEEEE:    
ExpBur          :eeeebbbebbebeebebebebebee-----eebebebebbbebeeebeebbbbbe--------ebeeebbbbe------eeebeeeeeeebbbbbbebee:    

queryA       169:SLVKDSQYEMDSEFEGELADDLAGFYRSEYM-EGNVRKVVATTQMQAADARKSFPCFDEPAMKAEFNITLIHPKDLTALSNMLPKGPSTPLPEDPNWNVT: 267
                : *     *    *          ***   *  * *  *  * **     **  ******** ** * *  *     ****** **  *  *  *      :
4p8q_B_1      97:ALLAGHNYTLKIEYSANISSSYYGFYGFSYTDESNEKKYFAATQFEPLAARSAFPCFDEPAFKATFIIKIIRDEQYTALSNM-PKKSSVVL--DDGLVQD: 193
SecStr          :EE TT EEEEEEEEEEE BSSSSSSEEEEEE TT  EEEEEE   TTTTHHHHS B   TT  BEEEEEEEE TTSEEEESS- EEEEEE --TTS EEE:    
ExpBur          :ebeeeeebebbbebebebeeeeebbbbbebeeeeeeeeebbbbbbbbebbbebbbbbbbbebbbbbbbbbbbbeebebbbbb-eeeeeeee--eeeebeb:    
Contact         :    b b                                                                                             

queryA       268:EFHTTPKMSTYLLAFIVSEFDYVEKQASNGVLIRIWARPSAIAAGHGDYALNVTGPILNFFAGHYDTPYPLPKSDQIGLPDFNAGAMENWGLVTYRENSL: 367
                :**    ****** **** *      *  ** *  * * *  *   *  ***  *   * **       *** * *    *** ********* * **  *:
4p8q_B_1     194:EFSESVKMSTYLVAFIVGEMKNL-SQDVNGTLVSIYAVPEKIGQVH--YALETTVKLLEFFQNYFEIQYPLKKLDLVAIPDFEAGAMENWGLLTFREETL: 290
SecStr          :EE    SB GGG  EEEE  EEE-EEE SS EEEEEE GGG SSTH--HHHHHHHHHHHHHHHHS S   SSEEEEEEESSTT      TTEEEEEGGGG:    
ExpBur          :ebeebeebbbbbbbbbbbebeeb-eeeeeebebbbbbbeebbeebe--bbbebbbebbebbbebbeeebebebbbbbbbbbeebbebbbbbbbbbeeebb:    

queryA       368:LFDPLSSSSSNKERVVTVIAHELAHQWFGNLVTIEWWNDLWLNEGFASYVEYLGADYAEPTWNLKDLMVLNDV----YRVMAVDALASSHPLSTPASEIN: 463
                :* *   **      *   ***************  ************   **            * *    *        *  * * **** *   *   :
4p8q_B_1     291:LYDSNTSSMADRKLVTKIIAHELAHQWFGNLVTMKWWNDLWLNEGFATFMEYFSLEKI-----FKELSSYEDFLDARFKTMKKDSLNSSHPIS---SSVQ: 382
SecStr          :   TTT  HHHHHHHHHHHHHHHHTTTBTTTBEESSGGGHHHHHHHHHHHHHHHHHHH-----SGGG THHHHHHHHHHHHHHHHSTT   S ---    :    
ExpBur          :bbeeeebbbeeebebbbbbbbbbbbbbbbbbbbbebbebbbbbbbbbbbbbbbbbeee-----beebbbebbbbebbbebbeebbbeebeebe---eebe:    

queryA       464:TPAQISELFDAISYSKGASVLRMLSSFLSEDVFKQGLASYLHTFAYQNTIYLNLWDHLQEAVNNRSIQLPTTVRDIMNRWTLQMGFPVITVDTSTGTL--: 561
                :   ** * **  ** ** * * **   ******      ***   *       ***   *  *         *   *  **** ***  **      *  :
4p8q_B_1     383:SSEQIEEMFDSLSYFKGSSLLLMLKTYLSEDVFQHAVVLYLHNHSYASIQSDDLWDSFNEVXNQ-----TLDVKRMMKTWTLQKGFPLVTVQKKGKELFI: 477
SecStr          :SHHHHHGGG HHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHTTT EE THHHHHHHH  -  -----  S TTHHHHHHHSSS EEEEEEEETTEEEE:    
ExpBur          :eeeebeebeeebbbbbbbbbbbbbbeebeeeebeebbbebbeebeeeebebeebbebbbee-ee-----eeeebbbbebbbeebbbbbbbbeeeeeebeb:    

queryA       562:SQEHFLLDPDSNVTRPSEFNYVWIVPITSIRDGRQQQDYWLIDV--RAQNDLFSTSGNEWVLLNLNVTGYYRVNYDEENWRKIQTQLQRDHSAIPVINRA: 659
                : ** * *             * *  *            *               *    **  * *  *** * *    *     **           **:
4p8q_B_1     478:QQERFFLNXXXXXXXXXT-SYLWHIPLSYVTEXXNYSKYQSVSLLDKKSGVINLTEEVLWVKVNINMNGYYIVHYADDDWEALIHQLKINPYVLSDKDRA: 576
SecStr          :EEEE    --------- -     EE  EEE --    EEE  EE SSEEEEE SS  S EEESGGG SS EEEE HHHHHHHHHHHHH STTS HHHHH:    
ExpBur          :ebebbebe---------e-eeebebbbbbbbb--eeeeeeeeeebeeeeeebebeeebebbbbbbebbbbbbbbbeeebbebbbebbeeebeebebebbb:    

queryA       660:QIINDAFNLASAHKVPVTLALNNTLFLIEERQYMPWEAALSSLSYFKLMFDRSEVYGPMKNYLKKQVTPLFIHFRNN----------TNNWREIPENLMD: 749
                :  **  * **   ***   *      *  *    *   **       *     *  * *       **  *    *           *   **    *  :
4p8q_B_1     577:NLINNIFELAGLGKVPLKRAFDLINYLGNENHTAPITEALFQTD---LIYNLLEKLGYM-DLASRLVTRVFKLLQNQIQQQTWTDEGTPSMRELRSALLE: 672
SecStr          :HHHHHHHHHHHHTSS HHHHHHHGGGGGG  SHHHHHHHHHHHH---HHHHHHHHTT H-HHHHHHHHHHHHHHHHHHHH  SS  S HHHHHHHHHHHH:    
ExpBur          :bbbbbbbbbbbeeebebebbbebbebbeebeebbbbebbbebbe---bbbbbbbbeeee-ebbeebbeebbebbeebbeebebeeeeebbebebbbebbe:    

queryA       750:QYSEVNAISTACSNGVPECEEMVSGLFKQWMENPNNNPIHPNLRSTVYCNAIAQGGEEEWDFAWEQFRNATLVNEADKLRAALACSKELWILNRYLSYTL: 849
                :          **      *      **  **              **            * *            *  *   *** *     *       *:
4p8q_B_1     673:---------FACTHNLGNCSTTAMKLFDDWMASNGTQSLPTDVMTTVF--KVGAKTDKGWSFLLGKYISIGSEAEKNKILEALASSEDVRKLYWLMKSSL: 761
SecStr          :---------HHHHTT TTHHHHHHHHHHHHHHTTT S   GGGHHHHH--HHHTTSHHHHHHHHHHHTT S HHHHHHHHHHHTT S HHHHHHHHHHHH:    
ExpBur          :---------bbbebebeebbeebeeebeebbeeeeeeebebbbbbbbb--bbbbeeeebbebbbebbeeeeebeebebbbebbbbbeeeebbeebbebbb:    

queryA       850:NPDLIRKQDATSTIISITNNVIGQGLVWDFVQSNWKKLFNDYGGGSFSFSNLIQAVTRRFSTEYELQQLEQFKKDNEETGFGSGTRALEQALEKTKANIK: 949
                :* *  * *     *        *  * ****  ** **      **    *     *  ***   *     *     *  *    *    ***    ** :
4p8q_B_1     762:NGDNFRTQKLSFIIRTVGRHFPGHLLAWDFVKENWNKLVQKFPLGSYTIQNIVAGSTYLFSTKTHLSEVQAFFENQSEATF--RLRCVQEALEVIQLNIQ: 859
SecStr          :HTSSS GGGHHHHHHHHTTSTTTHHHHHHHHHHTHHHHHHHS TT HHHHHHHHHHHTT  SHHHHHHHHHHHHTT HHHH--SSHHHHHHHHHHHHHHH:    
ExpBur          :eeeebebbbbbbbbebbbeeeebbeebbebbeeebeebeeebeeeeebbeebbebbbebbbeeebbeebeebbeeeeeebb--eeebbebbbbebeebbe:    

queryA       950:WVKENKEVVLQWF: 962
                :*   *      * :
4p8q_B_1     860:WMEKNLKSLTWWL: 872
SecStr          :HHHHHHHHHTTT :    
ExpBur          :bbeebbeebeebb:    


Input Residue Numbers for Focused Sites

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