Protein Model on 3mdj_C_1_F_1 (TEMPLATE: 3mdj )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:3]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(AMPN_HUMAN) C 1 (C) polymer(polypeptide(L)) [819 aa] Endoplasmic reticulum aminopeptidase 1 :ERAP1_HUMAN
2 b F 1 (F) branched(oligosaccharide) alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 90R(H) 91P(A) 92Y(N) 239H(R) 240P(E) 258L (identity: 16.7 %/34.6 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:3mdj_C_1 identity=34.6%
queryA        71:WNRYRLPNTLKPDSYRVTLRPYLTPNDRGLYVFKGSSTVRFTCKEATDVIIIHSKKLNY---TLSQG--HRVVLRGVGGSQPPDIDKTELVEPTEYLVVH: 165
                :**  ***    *  *       **        * *   *  *    *  ** **  *     **  *   *           *      *  * * * * :
3mdj_C_1      13:WNKIRLPEYVIPVHYDLLIHANLTT-----LTFWGTTKVEITASQPTSTIILHSHHLQISRATLRKGXXERLSEEPLQVLEHPRQEQIALLAP-EPLLVG: 106
SecStr          :   SS  TTEEEEEEEEEEEEETTT-----TEEEEEEEEEEEESS  SEEEEE SS EEEEEEEE  --     EE EEEEETTTTEEEEE S-S   TT:    
ExpBur          :beeeebbebbebebbebbbbbebee-----ebbebebebebebeeebeebbbbbeebeeeebbbeee--eeeeeeebeeeebeebebbbbebe-eebeee:    
Contact         :                   bbb                                                                              

queryA       166:LKGSLVKDSQYEMDSEFEGELADDLAGFYRSEYM--EGNVRKVVATTQMQAADARKSFPCFDEPAMKAEFNITLIHPKDLTALSNM-LPKGPSTP--LPE: 260
                :*    *            * *     *** * *   **  *   * **     **  ******** ** * *         * *** * *       * *:
3mdj_C_1     107:LPYTVV--------IHYAGNLSETFHGFYKSTYRTKEGELR-ILASTQFEPTAARMAFPCFDEPAFKASFSIKIRREPRHLAISNMPLVKSVTVAEGLIE: 197
SecStr          :  EEEE--------EEEEEE BSSSSEEEEEEEE TT  EE-EEEEEE TTT GGGTS B  STTS BEEEEEEEE TT EEEESS EEEEEEEETTEEE:    
ExpBur          :eebebb--------bebebebbeeeebbbebebebeeeeee-ebbbbbbbeebbbbbbbbbbbbebbbebbbbbebeeebebbbbbeeeeeeeeeeeebb:    
Contact         :                                                                           bb                  bbb  

queryA       261:DPNWNVTEFHTTPKMSTYLLAFIVSEFDYVEKQASNGVLIRIWARPSAIAAGHGDYALNVTGPILNFFAGHYDTPYPLPKSDQIGLPDFNAGAMENWGLV: 360
                :*       *  * ****** *** * *  * *    **     * *  *     ****      * *       ****** *    ***  ******** :
3mdj_C_1     198:D------HFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKI--NQADYALDAAVTLLEFYEDYFSIPYPLPKQDLAAIPDFQSGAMENWGLT: 289
SecStr          :E------EE    SB GGG  EEEE  EEEEEE TTS EEEEEE TTTG--GG HHHHHHHHHHHHHHHHHHTS  SSSEEEEEEETT  S EE  TTEE:    
ExpBur          :b------ebeebeebbbbbbbbbbbbbeeeeeebeeebebbbbbbeeeb--ebbebbbebbbebbebbbebbebebebebbbbbbbbebeeebbbbbbbb:    

queryA       361:TYRENSLLFDPLSSSSSNKERVVTVIAHELAHQWFGNLVTIEWWNDLWLNEGFASYVEYLGADYAEPTWNLKDLMVLNDVYRVMAVDALASSHPLSTPAS: 460
                :****  ****   ** * *       ************** *************   *        *     *          * **** **        :
3mdj_C_1     290:TYRESALLFDAEKSSASSKLDITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVTHPELKVGDYF-FGKCFDAMEVDALNSS---XXXXX: 385
SecStr          :EEEGGGT   TT S HHHHHHHHHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHH GGG THHHH-HHHHHHHHHHHTSS  --------:    
ExpBur          :bbebebbbeeeeeeebebebebbbbbbbbbbbbbbbbbbbbeeeebbebbbbbbbbbbbbbbeebbeebebeeeb-beebbebbeebbeeee--------:    

queryA       461:EINTPAQISELFDAISYSKGASVLRMLSSFLSEDVFKQGLASYLHTFAYQNTIYLNLWDHLQE--------------------AVNNRSIQLPTTVRDIM: 540
                :            *  ** ***  * **   ** * ** *   **    * **    ***                                    *   *:
3mdj_C_1     386:XXXXXXXXXXXXDDVSYDKGACILNMLREYLSADAFKSGIVQYLQKHSYKNTKNEDLWDSMASIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDVKTMM: 485
SecStr          :------------ HHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHTTEEE HHHHHHHHHT -----------------------------  HHHHH:    
ExpBur          :------------eeeebbbbbbbbbbbbebbeeebbeebbbebbeebeeeebebeebbebbeee-----------------------------eebeebb:    

queryA       541:NRWTLQMGFPVITVDTSTGT---LSQEHFLLDPDSNVTRPSEFNYVWIVPITSIRDGRQQQDYWLIDVRAQNDLFSTSGNEWVLLNLNVTGYYRVNYDEE: 637
                :* **** *** **  *  *      ***                * * ** * *          *        *      **   *    *** * *   :
3mdj_C_1     486:NTWTLQRGFPLITI-TVRGRNVHMKQEHYM----KXXXXAPDTGYLWHVPLTFITSKSDMVHRFLLKTKT-DVLILPEEVEWIKFNVGMNGYYIVHYEDD: 579
SecStr          :HHHHSSSSEEEEEE-EEETTEEEEEEEEE ---- ----         EEEEEEESS SS EEEEE SSE-EEEE SS  S EEESGGG SSSEEEESTT:    
ExpBur          :ebbeeeebbbbbbb-beeeeebebebebbe----e----eeeeeeebbbbbbbbbeeeeeeeebbbeeee-eebebeeebebbbbbbbbbbbbbbbbeee:    

queryA       638:NWRKIQTQLQRDHSAIPVINRAQIINDAFNLASAHKVPVTLALNNTLFLIEERQYMPWEAALSSL-SYFKLM--FDRSEVYGPMKNYLKKQVTPLFIHFR: 734
                : *      *   * *     **  ** ** * *  *     **   * *  *   **    *  *    ***   *  **    *  *      *     :
3mdj_C_1     580:GWDSLTGLLKGTHTAVSSNDRASLINNAFQLVSIGKLSIEKALDLSLYLKHETEIMPVFQGLNELIPMYKLMEKRDMNEVETQFKAFLIRLLRDLI----: 675
SecStr          :HHHHHHHHHHHHGGGS HHHHHHHHHHHHHHHTTTSS HHHHHHHHGGGGG   HHHHHHHHHHHHHHHHHHTTSS HHHHHHHHHHHHHHHHHHH----:    
ExpBur          :ebeebbebbeeebeebebebbbbbbbbbbbbbeeeebebeebbebbebbeebeebbbbebbbeebbebbebbbbbeeeebbeebbebbbebbeebb----:    

queryA       735:NNTNNWREIPENLMDQYSEVNAISTACSNGVPECEEMVSGLFKQWMENPNNNPIHPNLRSTVYCNAIAQGGEEEWDFAWEQFRNATLVNEADKLRAALAC: 834
                :     *                   **      *     * *  * *   *          *   *      * ***            *      **  :
3mdj_C_1     676:-DKQTWTD-EGSVSERMLRSELLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVF--AVGAQSTEGWDFLYSKYQFSLSSTEKSQIEFALCR: 771
SecStr          :-HH  SSS- S HHHHHHHHHHHHHHHHTT HHHHHHHHHHHHHHHTTTS S   HHHHHHHH--HHHTTSHHHHHHHHHHTTTTTTSHHHHHHHHHHHT:    
ExpBur          :-eebebee-eebbbebebbbebbbbbbebebeebbeebeeebeebeeeebeeebeebbbbbbb--bbbbeeeebbebbbebbeebeeeeeeebbbebbbb:    

queryA       835:SKELWILNRYLSYTLNPDLIRKQDATSTIISITNNVIGQGLVWDFVQSNWKKLFNDYGGGSFSFSNLIQAVTRRFSTEYELQQLEQFKKDNEETGFGSGT: 934
                :      *   *      * *  *        *  *  *  * * *   ** **       * *        *  ***   *                   :
3mdj_C_1     772:TQNKEKLQWLLDESFKGDKIKTQEFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKXXXXSSSIAHMVMGTTNQFSTRTRLEEVKXXXXXXXXX--XXXX: 869
SecStr          : S HHHHHHHHHHTTSTTT  TTTHHHHHHHHTTSTTTHHHHHHHHHHTHHHHHT ----  SSHHHHHHHHTT   SHHHHHH ---------------:    
ExpBur          :beeeebbeebbebbeeeeebeeebbeebbbbbbebeebbebbbebbeeeeeebeee----eeebeebbebbbebbbeeebbeeee---------------:    

queryA       935:RALEQALEKTKANIKWVKENKEVVLQWF: 962
                :    *  *    ** *   *      * :
3mdj_C_1     870:XCVQQTIETIEENIGWMDKNFDKIRVWL: 897
SecStr          :- THHHHHHHHHHHHHHHHHHHHHHHHT:    
ExpBur          :-eeeebeeebeebbeebeebbeebeebb:    


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