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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(AMPN_HUMAN) | C 1 (C) | polymer(polypeptide(L)) [819 aa] | Endoplasmic reticulum aminopeptidase 1 :ERAP1_HUMAN | |
2 | b | F 1 (F) | branched(oligosaccharide) | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 90R(H) 91P(A) 92Y(N) 239H(R) 240P(E) 258L (identity: 16.7 %/34.6 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:3mdj_C_1 identity=34.6% |
queryA 71:WNRYRLPNTLKPDSYRVTLRPYLTPNDRGLYVFKGSSTVRFTCKEATDVIIIHSKKLNY---TLSQG--HRVVLRGVGGSQPPDIDKTELVEPTEYLVVH: 165 :** *** * * ** * * * * * ** ** * ** * * * * * * * * : 3mdj_C_1 13:WNKIRLPEYVIPVHYDLLIHANLTT-----LTFWGTTKVEITASQPTSTIILHSHHLQISRATLRKGXXERLSEEPLQVLEHPRQEQIALLAP-EPLLVG: 106 SecStr : SS TTEEEEEEEEEEEEETTT-----TEEEEEEEEEEEESS SEEEEE SS EEEEEEEE -- EE EEEEETTTTEEEEE S-S TT: ExpBur :beeeebbebbebebbebbbbbebee-----ebbebebebebebeeebeebbbbbeebeeeebbbeee--eeeeeeebeeeebeebebbbbebe-eebeee: Contact : bbb queryA 166:LKGSLVKDSQYEMDSEFEGELADDLAGFYRSEYM--EGNVRKVVATTQMQAADARKSFPCFDEPAMKAEFNITLIHPKDLTALSNM-LPKGPSTP--LPE: 260 :* * * * *** * * ** * * ** ** ******** ** * * * *** * * * *: 3mdj_C_1 107:LPYTVV--------IHYAGNLSETFHGFYKSTYRTKEGELR-ILASTQFEPTAARMAFPCFDEPAFKASFSIKIRREPRHLAISNMPLVKSVTVAEGLIE: 197 SecStr : EEEE--------EEEEEE BSSSSEEEEEEEE TT EE-EEEEEE TTT GGGTS B STTS BEEEEEEEE TT EEEESS EEEEEEEETTEEE: ExpBur :eebebb--------bebebebbeeeebbbebebebeeeeee-ebbbbbbbeebbbbbbbbbbbbebbbebbbbbebeeebebbbbbeeeeeeeeeeeebb: Contact : bb bbb queryA 261:DPNWNVTEFHTTPKMSTYLLAFIVSEFDYVEKQASNGVLIRIWARPSAIAAGHGDYALNVTGPILNFFAGHYDTPYPLPKSDQIGLPDFNAGAMENWGLV: 360 :* * * ****** *** * * * * ** * * * **** * * ****** * *** ******** : 3mdj_C_1 198:D------HFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKI--NQADYALDAAVTLLEFYEDYFSIPYPLPKQDLAAIPDFQSGAMENWGLT: 289 SecStr :E------EE SB GGG EEEE EEEEEE TTS EEEEEE TTTG--GG HHHHHHHHHHHHHHHHHHTS SSSEEEEEEETT S EE TTEE: ExpBur :b------ebeebeebbbbbbbbbbbbbeeeeeebeeebebbbbbbeeeb--ebbebbbebbbebbebbbebbebebebebbbbbbbbebeeebbbbbbbb: queryA 361:TYRENSLLFDPLSSSSSNKERVVTVIAHELAHQWFGNLVTIEWWNDLWLNEGFASYVEYLGADYAEPTWNLKDLMVLNDVYRVMAVDALASSHPLSTPAS: 460 :**** **** ** * * ************** ************* * * * * **** ** : 3mdj_C_1 290:TYRESALLFDAEKSSASSKLDITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVTHPELKVGDYF-FGKCFDAMEVDALNSS---XXXXX: 385 SecStr :EEEGGGT TT S HHHHHHHHHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHH GGG THHHH-HHHHHHHHHHHTSS --------: ExpBur :bbebebbbeeeeeeebebebebbbbbbbbbbbbbbbbbbbbeeeebbebbbbbbbbbbbbbbeebbeebebeeeb-beebbebbeebbeeee--------: queryA 461:EINTPAQISELFDAISYSKGASVLRMLSSFLSEDVFKQGLASYLHTFAYQNTIYLNLWDHLQE--------------------AVNNRSIQLPTTVRDIM: 540 : * ** *** * ** ** * ** * ** * ** *** * *: 3mdj_C_1 386:XXXXXXXXXXXXDDVSYDKGACILNMLREYLSADAFKSGIVQYLQKHSYKNTKNEDLWDSMASIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDVKTMM: 485 SecStr :------------ HHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHTTEEE HHHHHHHHHT ----------------------------- HHHHH: ExpBur :------------eeeebbbbbbbbbbbbebbeeebbeebbbebbeebeeeebebeebbebbeee-----------------------------eebeebb: queryA 541:NRWTLQMGFPVITVDTSTGT---LSQEHFLLDPDSNVTRPSEFNYVWIVPITSIRDGRQQQDYWLIDVRAQNDLFSTSGNEWVLLNLNVTGYYRVNYDEE: 637 :* **** *** ** * * *** * * ** * * * * ** * *** * * : 3mdj_C_1 486:NTWTLQRGFPLITI-TVRGRNVHMKQEHYM----KXXXXAPDTGYLWHVPLTFITSKSDMVHRFLLKTKT-DVLILPEEVEWIKFNVGMNGYYIVHYEDD: 579 SecStr :HHHHSSSSEEEEEE-EEETTEEEEEEEEE ---- ---- EEEEEEESS SS EEEEE SSE-EEEE SS S EEESGGG SSSEEEESTT: ExpBur :ebbeeeebbbbbbb-beeeeebebebebbe----e----eeeeeeebbbbbbbbbeeeeeeeebbbeeee-eebebeeebebbbbbbbbbbbbbbbbeee: queryA 638:NWRKIQTQLQRDHSAIPVINRAQIINDAFNLASAHKVPVTLALNNTLFLIEERQYMPWEAALSSL-SYFKLM--FDRSEVYGPMKNYLKKQVTPLFIHFR: 734 : * * * * ** ** ** * * * ** * * * ** * * *** * ** * * * : 3mdj_C_1 580:GWDSLTGLLKGTHTAVSSNDRASLINNAFQLVSIGKLSIEKALDLSLYLKHETEIMPVFQGLNELIPMYKLMEKRDMNEVETQFKAFLIRLLRDLI----: 675 SecStr :HHHHHHHHHHHHGGGS HHHHHHHHHHHHHHHTTTSS HHHHHHHHGGGGG HHHHHHHHHHHHHHHHHHTTSS HHHHHHHHHHHHHHHHHHH----: ExpBur :ebeebbebbeeebeebebebbbbbbbbbbbbbeeeebebeebbebbebbeebeebbbbebbbeebbebbebbbbbeeeebbeebbebbbebbeebb----: queryA 735:NNTNNWREIPENLMDQYSEVNAISTACSNGVPECEEMVSGLFKQWMENPNNNPIHPNLRSTVYCNAIAQGGEEEWDFAWEQFRNATLVNEADKLRAALAC: 834 : * ** * * * * * * * * * *** * ** : 3mdj_C_1 676:-DKQTWTD-EGSVSERMLRSELLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVF--AVGAQSTEGWDFLYSKYQFSLSSTEKSQIEFALCR: 771 SecStr :-HH SSS- S HHHHHHHHHHHHHHHHTT HHHHHHHHHHHHHHHTTTS S HHHHHHHH--HHHTTSHHHHHHHHHHTTTTTTSHHHHHHHHHHHT: ExpBur :-eebebee-eebbbebebbbebbbbbbebebeebbeebeeebeebeeeebeeebeebbbbbbb--bbbbeeeebbebbbebbeebeeeeeeebbbebbbb: queryA 835:SKELWILNRYLSYTLNPDLIRKQDATSTIISITNNVIGQGLVWDFVQSNWKKLFNDYGGGSFSFSNLIQAVTRRFSTEYELQQLEQFKKDNEETGFGSGT: 934 : * * * * * * * * * * * ** ** * * * *** * : 3mdj_C_1 772:TQNKEKLQWLLDESFKGDKIKTQEFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKXXXXSSSIAHMVMGTTNQFSTRTRLEEVKXXXXXXXXX--XXXX: 869 SecStr : S HHHHHHHHHHTTSTTT TTTHHHHHHHHTTSTTTHHHHHHHHHHTHHHHHT ---- SSHHHHHHHHTT SHHHHHH ---------------: ExpBur :beeeebbeebbebbeeeeebeeebbeebbbbbbebeebbebbbebbeeeeeebeee----eeebeebbebbbebbbeeebbeeee---------------: queryA 935:RALEQALEKTKANIKWVKENKEVVLQWF: 962 : * * ** * * * : 3mdj_C_1 870:XCVQQTIETIEENIGWMDKNFDKIRVWL: 897 SecStr :- THHHHHHHHHHHHHHHHHHHHHHHHT: ExpBur :-eeeebeeebeebbeebeebbeebeebb: |