Protein Model on 3mdj_B_1_E_1 (TEMPLATE: 3mdj )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(AMPN_HUMAN) B 1 (B) polymer(polypeptide(L)) [821 aa] Endoplasmic reticulum aminopeptidase 1 :ERAP1_HUMAN
2 b E 1 (E) branched(oligosaccharide) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 90R(H) 92Y(N) 94T 240P(E) (identity: 25.0 %/34.2 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:3mdj_B_1 identity=34.2%
queryA        71:WNRYRLPNTLKPDSYRVTLRPYLTPNDRGLYVFKGSSTVRFTCKEATDVIIIHSKKLNYTLSQGHRVVLRGVGGSQPPDIDKTELVEPTEYLVVHLKGS-: 169
                :**  ***    *  *       **        * *   *  *    *  ** **  *     *  *  **   *          *  *       *    :
3mdj_B_1      13:WNKIRLPEYVIPVHYDLLIHANLTT-----LTFWGTTKVEITASQPTSTIILHSHHL-----QISRATLRKGAGERLSEEPLQVLEHPRQEQIALLAPEP: 102
SecStr          :   SS  SSEEEEEEEEEEEEETTT-----TEEEEEEEEEEEESS  SEEEEE SS -----EEEEEEEE SS SSTT EE EEEEETTTTEEEEE SS :    
ExpBur          :beeeebbeebebeebebbbebebee-----eebebebebebebeeebebbbbbbeeb-----eeeebbbbeeeeeeeeeeebeeeeeeebebbbbebeee:    
Contact         :                   b b b                                                                            

queryA       170:LVKDSQYEMDSEFEGELADDLAGFYRSEYM--EGNVRKVVATTQMQAADARKSFPCFDEPAMKAEFNITLIHPKDLTALSNM-LPKGPSTP--LPEDPNW: 264
                :*     *       * *     *** * *   **  *   * **     **  ******** ** * *         * *** * *       * **   :
3mdj_B_1     103:LLVGLPYTVVIHYAGNLSETFHGFYKSTYRTKEGELR-ILASTQFEPTAARMAFPCFDEPAFKASFSIKIRREPRHLAISNMPLVKSVTVAEGLIED---: 198
SecStr          :  TT  EEEEEEEEEE BSSSSEEEEEEEE TT  EE-EEEEEE TTT GGGTS B  STTS BEEEEEEEE TT EEEESS EEEEEEEETTEEEE---:    
ExpBur          :beeeeebebbbebebebbeeeebbbbbebebeeeeee-ebbbbbbbeebbbbbbbbbbbbebbbebbbbbebeeebebbbbbeeeeeeeeeeeebbb---:    
Contact         :                                                                        b                           

queryA       265:NVTEFHTTPKMSTYLLAFIVSEFDYVEKQASNGVLIRIWARPSAIAAGHGDYALNVTGPILNFFAGHYDTPYPLPKSDQIGLPDFNAGAMENWGLVTYRE: 364
                :    *  * ****** *** * *  * *    **     * *  *     ****      * *       ****** *    ***  ******** ****:
3mdj_B_1     199:---HFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKI--NQADYALDAAVTLLEFYEDYFSIPYPLPKQDLAAIPDFQSGAMENWGLTTYRE: 293
SecStr          :---EE    SB GGG  EEEE  EEEEEE TTS EEEEEE GGGG--GG HHHHHHHHHHHHHHHHHHTS  SSSEEEEEEETT  S EE  TTEEEEEG:    
ExpBur          :---bbeebeebbbbbbbbbbbbbeeeeeebeeebebbbbbbeeeb--eebebbbebbbebbebbbebbebebebebbbbbbbbebeeebbbbbbbbbbeb:    

queryA       365:NSLLFDPLSSSSSNKERVVTVIAHELAHQWFGNLVTIEWWNDLWLNEGFASYVEYLGADYAEPTWNLKDLMVLNDVYRVMAVDALASSHPLSTPASEINT: 464
                :  ****   ** * *       ************** *************   *        *     *          * **** **            :
3mdj_B_1     294:SALLFDAEKSSASSKLDITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVTHPELKVGDYF-FGKCFDAMEVDALNSS---XXXXXXXXX: 389
SecStr          :GGT   TT S HHHHHHHHHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHH GGG THHHH-HHHHHHHHHHHTSS  ------------:    
ExpBur          :ebbbeeeeeeebebebebbbbbbbbbbbbbbbbbbbbeebebbebbbbbbbbbbbbbbeeebeebebeebb-beebbebbeebbeeee------------:    

queryA       465:PAQISELFDAISYSKGASVLRMLSSFLSEDVFKQGLASYLHTFAYQNTIYLNLWDHLQE--------------------AVNNRSIQLPTTVRDIMNRWT: 544
                :        *  ** ***  * **   ** * ** *   **    * **    ***                                    *   ** **:
3mdj_B_1     390:XXXXXXXXDDVSYDKGACILNMLREYLSADAFKSGIVQYLQKHSYKNTKNEDLWDSMASIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDVKTMMNTWT: 489
SecStr          :-------- HHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHTTEEE HHHHHHHHTT -----------------------------  HHHHHHHHH:    
ExpBur          :--------eeeebbbbbbbbbbbeebbeeebbeebbbebbeebeeebbebeebbebbeee-----------------------------eebeebbebbe:    

queryA       545:LQMGFPVITVDTSTGT---LSQEHFLLDPDSNVTRPSEFNYVWIVPITSIRDGRQQQDYWLIDVRAQNDLFSTSGNEWVLLNLNVTGYYRVNYDEENWRK: 641
                :** *** **  *  *      ***                * * ** * *          *        *      **   *    *** * *    *  :
3mdj_B_1     490:LQRGFPLITI-TVRGRNVHMKQEHYM----KXXXXAPDTGYLWHVPLTFITSKSDMVHRFLLKTKT-DVLILPEEVEWIKFNVGMNGYYIVHYEDDGWDS: 583
SecStr          :SSSS EEEEE-EEETTEEEEEEEE  ---- ----         EEEEEEESS SS EEEEE SSE-EEEE SS  S EEESGGG SSSEEEETTTHHHH:    
ExpBur          :eeebbbbbbb-eeeeeebebebebbe----e----eeeeeeebbbbbbbbbeeeeeeeebbbeeee-eebebeeeeebbbbbbbbebbbbbbbeeeebee:    

queryA       642:IQTQLQRDHSAIPVINRAQIINDAFNLASAHKVPVTLALNNTLFLIEERQYMPWEAALSSL-SYFKLM--FDRSEVYGPMKNYLKKQVTPLFIHFRNNTN: 738
                :    *   * *     **  ** ** * *  *     **   * *  *   **    *  *    ***   *  **    *  *      *         :
3mdj_B_1     584:LTGLLKGTHTAVSSNDRASLINNAFQLVSIGKLSIEKALDLSLYLKHETEIMPVFQGLNELIPMYKLMEKRDMNEVETQFKAFLIRLLRDLI-----DKQ: 678
SecStr          :HHHHHHHHGGGS HHHHHHHHHHHHHHHTTTSS HHHHHHHHGGGGG   HHHHHHHHHHHHHHHHHHTTSS HHHHHHHHHHHHHHHHHHH-----HH :    
ExpBur          :bbebbeeebeebebbbbbbbbbbbbbbbeeeebebeebbebbebbeebeebbbbebbbeebeebbebbbbeeeeebbeebbebbbebbeebb-----eeb:    

queryA       739:NWREIPENLMDQYSEVNAISTACSNGVPECEEMVSGLFKQWMENPNNNPIHPNLRSTVYCNAIAQGGEEEWDFAWEQFRNATLVNEADKLRAALACSKEL: 838
                : *                   **      *     * *  * *   *          *   *      * ***            *      **      :
3mdj_B_1     679:TWTD-EGSVSERMLRSELLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVF--AVGAQSTEGWDFLYSKYQFSLSSTEKSQIEFALCRTQNK: 775
SecStr          : SSS- S HHHHHHHHHHHHHHHHTT HHHHHHHHHHHHHHHTTTS S   HHHHHHHH--HHHTTSHHHHHHHHHHHHS TT HHHHHHHHHHTT S H:    
ExpBur          :ebee-eebbbebebbbebbbbbbebebeebbeebeeebeebeeeeeeeebeebbbbbbb--bbbbeeeebbebbbebbeeeeeeeebebbbebbbbbeee:    

queryA       839:WILNRYLSYTLNPDLIRKQDATSTIISITNNVIGQGLVWDFVQSNWKKLFNDYGGGSFSFSNLIQAVTRRFSTEYELQQLEQFKKDNEETGFGSGTRALE: 938
                :  *   *      * *  *        *  *  *  * * *   ** **       * *        *  ***   *                       :
3mdj_B_1     776:EKLQWLLDESFKGDKIKTQEFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKXXXXSSSIAHMVMGTTNQFSTRTRLEEVKXXXXXXXXX--XXXXXCVQ: 873
SecStr          :HHHHHHHHHTTSTTT  TTTHHHHHHHHHSSTTTHHHHHHHHHHTHHHHTT ----  SSHHHHHHHHTT   SHHHHHH ---------------- TH:    
ExpBur          :eebeebbebbeeeeebeeebbeebbbbbbebbebbebbbebbeeeeeebeee----eeebeebbebbbebbbeeeebeeee----------------eee:    

queryA       939:QALEKTKANIKWVKENKEVVLQWF: 962
                :*  *    ** *   *      * :
3mdj_B_1     874:QTIETIEENIGWMDKNFDKIRVWL: 897
SecStr          :HHHHHHHHHHHHHHHHHHHHHHHT:    
ExpBur          :ebeebbeebbebbeebbeebeebb:    


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