#WARNING:no index is registered index "YP_009724390.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009724390.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein. [pdbjlvh2]Protein Model on 7jjj_D_1_GB_1

Protein Model on 7jjj_D_1_GB_1 (TEMPLATE: 7jjj )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(queryA) D 1 (D) polymer(polypeptide(L)) [1120 aa] Spike glycoprotein :SPIKE_SARS2
2 b GB 1 (6) branched(oligosaccharide) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose 616N 618T 620V (identity: 100.0 %/98.7 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7jjj_D_1 identity=98.7%
queryA        14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113
                :****************************************************************************************************:
7jjj_D_1      14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113
SecStr          :             EEEE TT  EE  SS    S EEEEEEEE  TT EEEEEEEE   STT   EE   EEE TT EEEEEEESSS EEEEEEESS STT:    
ExpBur          :eebebeeeeeeeeeebebbbbbbbbeeeeeeeeeeeebebebbbbebebbbbbbeeeeeeeeeebbbbeebebeebbbbbbbbbbbbbbbbbbbeebeee:    

queryA       114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213
                :****************************************************************************************************:
7jjj_D_1     114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213
SecStr          :S EEEEEE SS EEEEEEEEEE SS  EEEEE SSSS EEE   TTEEEEEEEEEEEE            SS  EEEEEEEEEETTEEEEEEEEEE   S:    
ExpBur          :eebbbbbeebeeeebebbebebbebbbbbbebeeeeeeeeeebeebbeeeeeeeeeeebeeeebebeeeeeebeebebbbbbeeeeebebbbeeeebebe:    

queryA       214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313
                :****************************************************************************************************:
7jjj_D_1     214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313
SecStr          :SS      EEEEEEEE       EEEEEEEEEE TTS S HHHH EE SEEEEEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHTT S   SEEE:    
ExpBur          :eebeeeebbbeeeeebebebebeebbbbbbbbeeeebeeeeeebbbbbebbbbbbebeebebbbebeeebebeebbbbeeebbbbbebeeeebebeebee:    

queryA       314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413
                :****************************************************************************************************:
7jjj_D_1     314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413
SecStr          :EE  B      EEEE      B  HHHHHS S   BGGG EEEE  SEE  GGGGTTT   SEEEESSS GGGGGG EEEEEEEEEEEEEGGGGGGSSTT:    
ExpBur          :ebeebeeeeeeebbbbeebeeebebeebbeeeebbbbbebeeeebeebbbebeebeeeeeeeeeebeebeeeebeebbbbebbbbbbbbebebbebbeee:    

queryA       414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513
                :****************************************************************************************************:
7jjj_D_1     414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513
SecStr          :  SHHHHHT    TT  SEEEEE  TTTS  TT  TT EEE   SS   TT        EE TT   SS  BTTEE SEEE    TTS GGGSEEEEEEE:    
ExpBur          :eeeebbeebbebbeebebbbbbbebbeebbeeebbeebebbeebeeebeeeeeeeeeebeebeeeebeeeeeebbeebbeebbbeeeeeebebbbbbbbb:    

queryA       514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613
                :****************************************************************************************************:
7jjj_D_1     514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613
SecStr          :EEE SSS  SEE S        SSEEEEEETTEEEEEEEEE      TT  B   TTS   EEE SSS  EEEEE S BS EEEEE  TTT    EEEET:    
ExpBur          :bbeeeeeebebbbeeeeeeeeeeebbebbbbbbeeebebeeeeeebeeeebbeeeeeeeeebbbbbeeeebbebeebeeebbbbbbbbeeebeeebbbbe:    

queryA       614:DVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIA: 713
                :***************************************************************             ************************:
7jjj_D_1     614:DVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXXQSIIAYTMSLGAENSVAYSNNSIA: 713
SecStr          :T           SSS     SSS   S EEEETTEEEESSEEEEEEE   S  BTTEEEEEE ------------- EEEEEEE  S        TTEEE:    
ExpBur          :ebebeeeeeeeeeeeeeeeeebeeeeeeebebeebbbbebeebeeeeeeebebeeebbbbeee-------------eebbbbeeeeeeeeeeeeeeeeee:    
Contact         :  b b b                                                                                             

queryA       714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813
                :****************************************************************************************************:
7jjj_D_1     714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813
SecStr          :EEEEEEEEEEEEEEE    EEEE HHHHHHTT HHHHHHHGGGTHHHHHHHHHHHHHHHHHHHHHHHHH   SS     S   STT   TTTSB TTSSS:    
ExpBur          :bbeebebebeeebbbbbbbbbebebeebbbeebeebeeebeeeeeebeebeeebeebbeebbebbeebbbebeeeeeebeeeebeebebeebbbeeeeeb:    

queryA       814:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913
                :****************************************************************************************************:
7jjj_D_1     814:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913
SecStr          :  BHHHHHHHHHS  S  SS   GGGG SGGGGT HHHHHHTTTEEEE  SS HHHHHHHHHHHHHHHHHTGGGGSSSS     HHHHHHHHHHHHT  T:    
ExpBur          :ebbebbbbbbeebeeeeeeeeeeeeebeeeeeeeeeebbbeeebbeeeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebbebbbebbeebebee:    

queryA       914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013
                :************************************************************************  **************************:
7jjj_D_1     914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLI:1013
SecStr          :HHHHHTHHHHHHHHHHHHHHHHHHHHH  GGGHHHHHHHHHHHHHHHHHHHGGG  TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :ebbeeeeeebbebbeebbeebeeebeeeeeebeebeebbeebeebbeebeeebeeeeebebbebeebeeeeeeeebeebbeebbebbbebbeebbeebee:    

queryA      1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113
                :****************************************************************************************************:
7jjj_D_1    1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113
SecStr          :HHHHHHHHHHHHHHHHHHHTSS    TTSSSSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEES EESSSSEEEESSSEEEE SS EEEE SSS   B:    
ExpBur          :ebeebeeebeebbebbeebbeebbeeeeebbeeebbbbbbbbbbebbbbbbbbbeebeeeebebbebbbeeeebbeeeeebbbbeeeebbbbbeebeeee:    

queryA      1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELD:1146
                :*********************************:
7jjj_D_1    1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELD:1146
SecStr          :  BTTSEEEES TTTSTT EE   B TTHHHH :    
ExpBur          :ebbeeebeeeeebeebeebeeeebeeeeeeeee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123