#WARNING:no index is registered index "YP_009724390.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009724390.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein. [pdbjlvh2]Protein Model on 7jjj_C_1_HC_1

Protein Model on 7jjj_C_1_HC_1 (TEMPLATE: 7jjj )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(queryA) C 1 (C) polymer(polypeptide(L)) [1108 aa] Spike glycoprotein :SPIKE_SARS2
2 b HC 1 (XA) branched(oligosaccharide) beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose 209P 220F 286T (identity: 100.0 %/97.6 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7jjj_C_1 identity=97.6%
queryA        14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113
                :****************************************************************************************************:
7jjj_C_1      14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113
SecStr          :             EEEE TT   B  SS    SEEEEEEEEE  TT EEEEE      TTTT       EEE TT EEEEEEESSS EEEEEEESSSSTT:    
ExpBur          :eebebeeeeeeeeeebebeebbbbbeeeeeeeeeeeebeebbbbbebebebbebebeeeeeeeebbbbeebebeebbbbbbbbbbbbbbbbbbbbebeee:    

queryA       114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213
                :****************************************************************************************************:
7jjj_C_1     114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213
SecStr          :S EEEEEEETTEEEEEEEEEEEEEEEEEEEEE SSSS  EEEEEEEEEEEEEEEEEEE            SS  EEEEEEEEEETTEEEEEEEEEE   S:    
ExpBur          :eebbbbbeeeebeebebbebebbebbbbbbebbeeeeeeebebebbeeeeeeeeeeeeeeeeebebeeeeeebeebebbbbbeeeeebebbeeeeebebe:    
Contact         :                                                                                               b    

queryA       214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313
                :****************************************************************************************************:
7jjj_C_1     214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313
SecStr          :SS       BEEEEEE       EEEEEEEEE  TTS   TTTS B  SEEEEEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHTT S   SEEE:    
ExpBur          :eebeeeebbbeeeeebebebebeebbbbbbbbbbeebeeeebebbbbbbbbbbbbebeebebbbebeeebebeebbbbeeebbbebebeeeebebeebee:    
Contact         :      b                                                                 b                           

queryA       314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413
                :****************************************************************************************************:
7jjj_C_1     314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413
SecStr          :EE        SEEEE      B  HHHHHS S  EEGGG EEEE  SEE  GGGHHHH   SEEEESSS GGGGGG EEEEEEEEEEEEEGGGGGGSSTT:    
ExpBur          :ebeebeeeeeeebbbbeeeeeebebeeebebeebbbbbebeeeebeebbbeeeebeeeeeeeeeebeebeeeebeebbbbebebbbbbbebebbebbeee:    

queryA       414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513
                :****************************************************************************************************:
7jjj_C_1     414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513
SecStr          :  SHHHHHT    TT  SEEEEE  TTTS  TT  TT EEE   SS   TT        EE TT   SS  BTTEE SEEE    TTS GGGSEEEEEEE:    
ExpBur          :eeeebbeebbebbeebebbbbbbebbeebbeeebbeebebbeebeeebeeeeeeeeeebeebeeeebeeeeeebbeebbeebbbbeeeeebebbbbbbbe:    

queryA       514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613
                :****************************************************************************************************:
7jjj_C_1     514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613
SecStr          :EEE SSS  SEE S        SSEEEEEETTEEEEEEEEE      TT  B   TTS   EEE SSS  EEEEE S  S EEEEE  TTT    EEEET:    
ExpBur          :bbeeeeeebebbbeeeeeeeeeeebbebbbbbeeeebbbeebeeebeeeebbbeeeeeebbbbbbbeeeebbebeebeeebbbbbbbbeeebeeebbbbe:    

queryA       614:DVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIA: 713
                :*****             *********************************************            *************************:
7jjj_C_1     614:DVNCTXXXXXXXXXXXXXTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXSQSIIAYTMSLGAENSVAYSNNSIA: 713
SecStr          :T    -------------  SSS   S EEEETTEEEESSEEEEEEE   S  BTTEEEEEE ------------  EEEEEEE  S        TTEEE:    
ExpBur          :ebebe-------------eeebeeeeeeebebebbbbbebeeeeeeeeeebebeeebbbbeee------------eebbbbbeeeeeeeeeeeeeeeeee:    

queryA       714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813
                :****************************************************************************************************:
7jjj_C_1     714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813
SecStr          :E SEEEEEEEEEEEE    EEEE TTHHHHTT HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHH   S      S   STT   TTTSB TTSSS:    
ExpBur          :bbeebebebeebbbbbbbbbbebebeebbbeebeebeebbeeeeeebeebeeebeebbeebbebbeebbbebeeeeeebeeeebeebebeebbbbeeeeb:    

queryA       814:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913
                :****************************************************************************************************:
7jjj_C_1     814:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913
SecStr          :  BHHHHHHHHHS  S  S    GGGGSSGGGGT HHHHHHTTTEEEE  SS HHHHHHHHHHHHHHHHHTGGGGSSSS     HHHHHHHHHHHHT  T:    
ExpBur          :ebbebbbebbeebeeeeeeeeeeeeebeeeebeeeeebbbeeebbeeeeeebeeeebbebbbbbbbbbbebbeebeeeeeeeeebbebbbebbeebebee:    

queryA       914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013
                :************************************************************************  **************************:
7jjj_C_1     914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLI:1013
SecStr          :HHHHHTHHHHHHHHHHHHHHHHHHHHH  GGGHHHHHHHHHHHHHHHHHHHGGG  TTSS S HHHHHHH  HHHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :ebbeeeeeebbebbeebbeebbeebeeeeeebeebeebbeebeebbeebeeebeeeeebebbebeebeeeeeeeebeebbeebbebbbebbeebbeebee:    

queryA      1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113
                :****************************************************************************************************:
7jjj_C_1    1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113
SecStr          :HHHHHHHHHHHHHHHHHHHTSS    TTSSSSSEEEEEEEEEETTEEEEEEEEEEEE  EEEEEES EESSSSEEEESSSEEEE SS EEEE TTS   B:    
ExpBur          :ebeebeeebeebbebbeebbbbbbeeeeebbeeebbbbbbbbbbebbbbbbbbbeebeeeebeebebbbeeeebbeeeeebbbbeeeebbbbbebbebee:    

queryA      1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELD:1146
                :*********************************:
7jjj_C_1    1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELD:1146
SecStr          :  BTTSEEEES TTT TT EE   B  HHHHH :    
ExpBur          :ebbeeebeeeeebeebeeeeeeebeebeeeeee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123