#WARNING:no index is registered index "YP_009724390.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009724390.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein.
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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(queryA) | A 1 (A) | polymer(polypeptide(L)) [1102 aa] | Spike glycoprotein,Collagen alpha-1(I) chain :SPIKE_SARS2:CO1A1_HUMAN | |
2 | b | XA 1 (A) | non-polymer(VCG) | 2-hydroxyethyl 2-deoxy-3,5-bis-O-(2-hydroxyethyl)-6-O-(2-{[(9E)-octadec-9-enoyl]oxy}ethyl)-alpha-L-xylo-hexofuranoside | 121N 126V 168F 170Y 175F 190R 192F 203I 226L 227V 230P (identity: 100.0 %/97.2 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7e7b_A_1 identity=97.2% |
queryA 14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113 :********************************************************* **************************************: 7e7b_A_1 14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVXXXXXTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113 SecStr : EEEEESS B SS SEEEEEEEEE TTEEEEEEEEE ----- EE EEE SS EEEEEEESS EEEEEEESS STT: ExpBur :eebebeeeeeeeeeebebebbbbbbbeeeebeeeeeebeebbbbbebebebbebeee-----bebbbbeebebeebbbbbbbbbbbbbbbbbbbeebeee: queryA 114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213 :****************************************************************************************************: 7e7b_A_1 114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213 SecStr :S EEEEEE SS EEEEEE EEE SS EEEEEEETTTTEEEEEE SEEEE EEEE SSEEEEEEEEEEEETTEEEEEEEEEEEEES: ExpBur :eebbbbbeebebebbbbbebebbebbbbbbebeeeeeeeeeebebbeeeeeeeeeeeebeeeebebeeeeeebeebebbbbbeeeeebebbeeebebeee: Contact : b b b b b b b b queryA 214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313 :****************************************************************************************************: 7e7b_A_1 214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313 SecStr :SS BEEEEEE EEEEEEEEEESTT S SSS B SEEEEEEE EEEEEEEEE SSS EEEEEETTSSHHHHHHHHTTSS SEEE: ExpBur :eebbeeebbbeeeeebebebebeebbbbbbbbbbeebeeeeeebbbbebbbbbbbebeebebbbebeeeeebeebbbbeeebbbbbbbeeeebebeebee: Contact : bb b queryA 314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413 :****************************************************************************************************: 7e7b_A_1 314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413 SecStr :EE EE B SB HHHHHS S BSTT EEEEE S B GGGGTTT SEEEEESS GGGGGG EESSEEEEEEEEEGGGGGGSSTT: ExpBur :ebeebeeeeeeebbbbeeeeeebebeebbeeeebebbbebeeeebeebbbeeeebeeeeeeeeeebbebeeeebeebbbbebebbbbbbbbebbebbbee: queryA 414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513 :****************************************************************************************************: 7e7b_A_1 414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513 SecStr : SHHHHHT TT EEEEEEE HHHH TT EEE SS TT EE SSS SS BTTEE SEEE TTS GGGSEEEEEEE: ExpBur :eeebbbbebbbbbeebebbbbbbebbeebbeeebbeebebbeebeeebeeeeebeeeebeeeeeeebeeeeeeebeebbeebebeeeeeebebbbbbbbe: queryA 514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613 :****************************************************************************************************: 7e7b_A_1 514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613 SecStr :E SSS EE S SSEEEEEETTEEEEEEEEE S TT EEE TT EEEEE SSS EEEEE S EEEEE TTT EEEET: ExpBur :bbebeeeebebbbeeeeeebbeeebbebbbbbbeeebebeeeeeebeeeebbeeeeeeebebbbbbeeeebbebeebeebbbbbbbbbbeebeeebbbbb: queryA 614:DVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIA: 713 :**** ******************************************** *************************: 7e7b_A_1 614:DVNCXXXXXXXXXXXXXXXWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXSQSIIAYTMSLGAENSVAYSNNSIA: 713 SecStr :T --------------- S S EEEETTEEEES EEEEEEE SEEEETTEEEEEE ------------ EEEEEEE TTEEE: ExpBur :ebee---------------eebeeeeeeebebeebbbbebeebeeeeeeebebeeebbbbbee------------eeebbbbeeeeeeeeeeeeeeeeee: queryA 714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813 :****************************************************************************************************: 7e7b_A_1 714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813 SecStr :EEEEEEEEEEEEEEE EEEE HHHHHTTT HHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHH S S SS STT TTTS TTSSS: ExpBur :bbeebebebeeebbbbbbbbbebebeebbbeebeebeebbeeeeeebeebeeebeebbebbbebbeebbbebeeeeeeeeeeebeebebeebbeeeeeeb: queryA 814:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913 :****************************************************************************************************: 7e7b_A_1 814:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913 SecStr : HHHHHHHHHS S SSS TTTS STHHHH HHHHHHTTTEEEE SS HHHHHHHHHHHHHHHHHSTTHHHHSS HHHHHHHHHHHTT H: ExpBur :ebbebbbbbbeebeeeeeeeeeeeeebeeeebeeeebbebeeebbeeeeeebeeeebbebbbbbbbbbbebbeebeeeeeeebebbebbbebbeebebee: queryA 914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013 :****************************************************************************************************: 7e7b_A_1 914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013 SecStr :HHHHHSHHHHHHHHHHHHHHHHHHHHH S S HHHHHHHHHHHHHHHHHHHGGG TTSS S HHHHHHHS TTHHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :ebbeeeeeebbebbeebbeebbeebeeeeeebeebbebbeebeebbbebbeebeeeeebebbebeebeeeeeeeebeebbeebbebbbebbeebbeebee: queryA 1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113 :****************************************************************************************************: 7e7b_A_1 1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113 SecStr :HHHHHHHHHHHHHHHHHHHTSS STTTSSSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEES EESSSSEEEESSSEEEESSS EEEE SSS E: ExpBur :bbeebeebbeebbebbeebbbbbbeeeebbbeeebbbbbbbbbbebbbbbbbbbeebeeeebebbebbbeeeebbebeebbbbbeeeebbbbbeebeeee: queryA 1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDS:1147 :**********************************: 7e7b_A_1 1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDS:1147 SecStr :E BTTTEEE S SSS TT EE B SSHHHHT : ExpBur :ebbeebbeeeeebeeeeeeeeeebeeeeeeeeee: |