[pdbjlvh2]Protein Model on 7dk4_D_1_I

#WARNING:no index is registered index "YP_009724390.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009724390.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein. [pdbjlvh2]Protein Model on 7dk4_D_1_I_1

Protein Model on 7dk4_D_1_I_1 (TEMPLATE: 7dk4 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(queryA)	D 1 (B)	polymer(polypeptide(L)) [1058 aa]	Spike glycoprotein :SPIKE_SARS2
2	b		I 1 (f)	polymer(polypeptide(L)) [218 aa]	The light chain of 2H2 Fab	379C 380Y 381G 382V 383S 412P 414Q 427D 428D 429F (identity: 100.0 %/93.1 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:7dk4_D_1 identity=93.1%

queryA        14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113
                :********************************************************        ************************************:
7dk4_D_1      14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHXXXXXXXXRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113
SecStr          :     TT       EEEESS   B SSS    SEEEEEEEEE  TTEEEE EEB  -------- B    EE SS EEEEEEESS  EEEEEEESS STT:    
ExpBur          :eeeebeeeeebeeeebebeebbbbbbeeeebeeeeeebeebbbbbeeebbebbbee--------ebbbeebebeebbbbbbbbbbbbbbbbbbbeebeee:    

queryA       114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213
                :****************************************************************************************************:
7dk4_D_1     114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213
SecStr          :S EEEEEE SS EEEEEE   B SS  EEEE SSSS   EEEEE SBS   S  EEEE            SSB EEEEEEEEEETTEEEEEEEEE   BS:    
ExpBur          :ebbbbbbbebeeebbebbebebbebbbbbbeeeeeeeebebebeebeeeeeeeeeeeebeeeeeebeeeeeebeebbbbbbbeeeeebbbbeeeeebebe:    

queryA       214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313
                :**********************************       ***********************************************************:
7dk4_D_1     214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSXXXXXXXSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313
SecStr          :SSS      BEEEEEEE      EEEEEEEEEE -------  S EE SEEEEEEE EEEEEEEEE SSS EEEEEETTT HHHHHHHHHT SS  SEEE:    
ExpBur          :ebbbebebbbeeeeebebeeebeebbbbbbbbee-------eeebebeebbbbbbebeeeebbbebeeebebeebbbeeeeebbebbbeeeeeebeebee:    

queryA       314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413
                :****************************************************************************************************:
7dk4_D_1     314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413
SecStr          :EEE  B   SSEEE      SB THHHHHT S    SSS EEEEE SSB   HHHHTSS  SEEEESSS TTTTTS  BSEEEEEEEEE TTTGGG STT:    
ExpBur          :ebeebeeeeeeebebbeeeeeebebeebbeeeebebbbebeeeebeebbbebeeeeeeeebeebebeeeebeebbeeebbebbbbbbbbbbebbeebbee:    
Contact         :                                                                 bbbbb                            b 

queryA       414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513
                :****************************************************************************************************:
7dk4_D_1     414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513
SecStr          :  SHHHHHT    TT  SEEEE B TTTS  TT B   EEES  SS   TT          SSSS   SS  SS   SEEE  B TT  TTT  EEEEEE:    
ExpBur          :eebebbbebbbbbeebebbbbbeebbeebeeeebbeebeebeeeeeebeeeeeeeeeebeeeeeeeeeeeeeeebeebbeebebeeebeebeebbbbbbb:    
Contact         :b            bbb                                                                                    

queryA       514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613
                :****************************************************************************************************:
7dk4_D_1     514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613
SecStr          :EEE  SS   BB          SEEEEEE SS EEEEEEEE      TT  EEE TTS EEEEE SSS  EEEEEE  B  EEEEE  TTT S  EEEEE:    
ExpBur          :bbeeeeeeeebebbeeeeeeeeeebbebebeebeeebbbeeeeeeeeeeebeeeeeeeeeebbebbbeeebbebeebbebbbbbbbbbbeebeeebbbee:    

queryA       614:DVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIA: 713
                :*******                    ************************************             ************************:
7dk4_D_1     614:DVNCTEVXXXXXXXXXXXXXXXXXXXXNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXXQSIIAYTMSLGAENSVAYSNNSIA: 713
SecStr          :T  GGG -------------------- EEE SSEEEES EEEEEEE  SEEEETTEEEEEE ------------- EEEEEEE           SSEEE:    
ExpBur          :ebebeee--------------------eeeebebbbbeebeebeeeeeeebebeeebbbbbee-------------eebbbbeeeeeeeeeeeeeeeeee:    

queryA       714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813
                :************************************************************************************************** *:
7dk4_D_1     714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKXS: 813
SecStr          :EEEEEEEEEEEEEEE     EEE HHHHHSTT HHHHHHHGGGTHHHHHHHHHHHHHHHHHHHHHHHHT   SS     S   SSS   TTTSB S  - :    
ExpBur          :bbeebebebeebbbbbbbbbbebebeebbbeebeebeebbeeeeeebeebeebbeebbeebbebbeebbeebeeebeeeeeeebeebebeebbbbeee-e:    

queryA       814:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913
                :**************                           ***********************************************************:
7dk4_D_1     814:KRSFIEDLLFNKVTXXXXXXXXXXXXXXXXXXXXXXXXXXXFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913
SecStr          :  BHHHHHHHHS  ---------------------------  SEEE   SS HHHHHHHHHHHHHHHHHTTTSTTTSS     HHHHHHHHHHTTT  H:    
ExpBur          :eebebbebbbeebe---------------------------eeebeeeeeebeeeebbeebbbbbbbbbbbbebbeeeeeeeeebeebbbebbebbebee:    

queryA       914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013
                :************************************************************************  **************************:
7dk4_D_1     914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLI:1013
SecStr          :HHHHHSHHHHHHHHHHHHHHHHHHHHH GGGGHHHHHHHHHHHHHHHHHHHGGG  TTSS S HHHHHTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :ebbeeeeeebbebbeebbeebeeebeeeeeebeebeebeeebeebbeebeeebeeeeebebbebeebeeeeeeeebeebbeebbebbbebbeebbeebee:    

queryA      1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113
                :****************************************************************************************************:
7dk4_D_1    1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113
SecStr          :HHHHHHHHHHHHHHHHHHHTSS    TTTSSSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEE  S EESSSSEEEESSSEEEE SSSEEEE SSS   B:    
ExpBur          :bbeebeebbeebbebbeebbbbebeeeebbbeeebbbbbbbbbbebbbbbbbbbeeeeeeebebbebbbeeeebbeeeebbbbbeeeebebbbebbeeee:    

queryA      1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDS:1147
                :**********************************:
7dk4_D_1    1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDS:1147
SecStr          :  BTTTEEE S TTTSTT EE   B THHHHHH :    
ExpBur          :ebbeeebeeeeebeebeebeeeebeeeeeeeeee:

Protein Model on 7dk4_D_1_I_1 (TEMPLATE: 7dk4 )

Input Residue Numbers for Focused Sites