#WARNING:no index is registered index "YP_009724390.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009724390.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein.
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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(queryA) | C 1 (C) | polymer(polypeptide(L)) [1037 aa] | Spike glycoprotein :SPIKE_SARS2 | |
2 | b | B 1 (B) | polymer(polypeptide(L)) [1010 aa] | Spike glycoprotein :SPIKE_SARS2 | 40D 41K 43F 45S 47V 200Y 230P 232G 233I 282N 413G 740M 745D 755Q 756Y 757G 759F 762Q 765R 768T 786K 787Q 788I 789Y 790K 796D 855F 861L 862P 864L 866T 869M 873Y 886W 889G 890A 892A 893A 894L 895Q 896I 897P 900M 904Y 912T 913Q 914N 917Y 918E 921K 967S 976V 978N 979D 981L 982S 983R 984L 985D 1019R 1031E 1039R 1042F (identity: 100.0 %/92.8 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7cn9_C_1 identity=92.8% |
queryA 27:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 126 :****************************************************************************************************: 7cn9_C_1 14:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 113 SecStr : EEE SS SSS SS EEEEEEE TT EEE S SS S SSSS TT B TT EEEEE SS S EEEESS SSSS EEEE SSSE: ExpBur :eeeebebbbbbbeeeeebeeeeeebeeebbbeeeebebbeeeeebeeeeeeeebeeebebeebbbbbbbebeeeebbbbbbeeeeeeebbbbeeeeeeeb: Contact : bb b b b queryA 127:VIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 226 :********************************* ************ ****************************************: 7cn9_C_1 114:VIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVXXXXXNCTFEYVSQPFLXXXXXXXXXXKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 213 SecStr :EEE S SSS SS ----- B ---------- EEEEEEEETTS EEEEEEEE S SSS S B : ExpBur :bbbbbeeeebebebeeeebeeeeeeeeebeeee-----eeeeeeeeeeee----------eebbbebbbeeeeebebbbeebeeeeeeebeeeebebeee: Contact : b queryA 227:VDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 326 :****************************************************************************************************: 7cn9_C_1 214:VDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 313 SecStr : S EEEE SSSSSSS S EEEEEEE TT EETTS HHHHHHHHHT SS SEEEEEEEE E: ExpBur :eeeeeeeebebbbbeebeeeeebeeeeeeeeeeeeeebbbbeebeeeebbbebeeebebeeeebeeebbebebbbeeeeeebeebeeebeebeeeeeeeb: Contact : b bb b queryA 327:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 426 :****************************************************************************************************: 7cn9_C_1 314:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 413 SecStr :EE S HHHHHT S SSS EEEEE S HHHHHSTTSTT EE SS TTGGGT EES EEEEEEEE SSTTTT BTTB HHHHHTS : ExpBur :ebbeeeeeebebeeeeeeeebbbbbebeeeebeebbbebeeebeeeebeeeeeeeeeeeebbeebbbebebbbbbbeeebbeebbeebeeebbeebbbeb: Contact : b queryA 427:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 526 :*********************************************** ****************************************: 7cn9_C_1 414:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYXXXXXXXXXXXXXNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 513 SecStr :SSS EEEEEE TT SSTTS EES SS SSS ------------- SEE S SSSS EEEEEEE SSSS EE : ExpBur :eeebbbbbbeebeeeeeeeeeeeebeeebeeeebeeeeeeeeeebee-------------eeeebbbeeebbbeeeeeebbebbbbeebeeeeeeeebbb: queryA 527:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHA: 626 :********************************************************************************************** : 7cn9_C_1 514:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVXXXXXX: 613 SecStr : SS EEETTB EEEE S SS S SSTT EEE TTT EEEEE EEEEEEE TTT EEE TT S ------: ExpBur :ebeeeeeeeeebbebbbbebeeebbbeeeeeeeeeeebeeeeeeeeeebbbbbeeeebbbbeebeebbbbbbbbbeeeeeebbbbbeeeeeeee------: queryA 627:DQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 726 : *************************************** *****************************************: 7cn9_C_1 614:XXXXXXXRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICAXXXXXXXXXXXXGSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 713 SecStr :------- SSSS EETTEE TTSEE B SS STTEE ------------ SS S EEEEB S TT B EEEEEEEEEE: ExpBur :-------eeeeeebeeeebebbbbbebeeeeeeeebebebeeeebb------------eeeeeeebebbeeeeeeeeeeeeeeeebebbeebebebeeeb: queryA 727:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 826 :****************************************************************************************************: 7cn9_C_1 714:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 813 SecStr :E B HHHHHHTT HHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH SSS S TT GGGTS S SSSS HHHHHHHHH : ExpBur :bbbbbebbebebeebbbeebeebeebbeeeeeebeebeeebeebbeebbebbebbbeebeeeeebeeeeebeebebeebbbeeeeeebbbebbeebeeeb: Contact : b b bbb b b b b bbbbb b queryA 827:TLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 926 :** **************************************************************************: 7cn9_C_1 814:TLXXXXXXXXXXXXXXXXXXXXXXXXQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 913 SecStr : ------------------------ SS B SS HHHHHHHHHHHHHHHHHTTTHHHHSS HHHHHHHHHHHHTS THHHHHHHHHHHHH: ExpBur :ee------------------------eeeebeeeeeeebeeeeebebbbbbbbbbbebbeebeebeeeeeebeebbbebbeebebeeebbeeeeeebbee: Contact : b bb b b b b b bb bbbbbb b b bbb bb b queryA 927:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1026 :*********************************************************** ***************************************: 7cn9_C_1 914:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1013 SecStr :HHHHHHHHHHHHHSS TTHHHHHHHHHHHHHHHHHHHHTT TTSS SSHHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :beebbbebbeeeeeeeeebeebbebbeebeebeeebeeebeeeeebebeebeebeeeeeeeebeebbeebbebbeebbeebbeebeeebeebeebbeebb: Contact : b b bb bbbbb b queryA 1027:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1126 :****************************************************************************************************: 7cn9_C_1 1014:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1113 SecStr :HHHHHHHTS TTTSSSSEEEEEEE BTTBEEEEEEEEEEE B B S EEETTEEEE SSSEEEBSSSS EEE TTS B BSSSSEEEEES: ExpBur :ebbbebbbbbeeeeebbeebebbbbbbbbbeebbbbbbbbbeeeeeeebeebebbbeeeebbeeeebebbbeeeebbbbeebbbeeeebeeebbeeeeeb: Contact : b b b queryA 1127:DVVIGIVNNTVYDP:1140 :**************: 7cn9_C_1 1114:DVVIGIVNNTVYDP:1127 SecStr :SSSSS B B : ExpBur :eeeeeeeebebeee: |