#WARNING:no index is registered index "YP_009724390.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009724390.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein.
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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(queryA) | B 1 (B) | polymer(polypeptide(L)) [1010 aa] | Spike glycoprotein :SPIKE_SARS2 | |
2 | b | CA 1 (B) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | 1098N 1100T 1101H 1103F (identity: 100.0 %/90.5 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7cn9_B_1 identity=90.5% |
queryA 27:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 126 :******************************************************* ********************************************: 7cn9_B_1 14:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNXVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 113 SecStr : EEE SS SS S EE EEEE SS EEE S SSS SSSS S - SS EEEE SSTTS EEEEESS SSSS EEEEE SSSE: ExpBur :eebebebbebbbeeeeeeeeeeeebeebbbebeeebeeeeeeeeeeeeeeeeeee-eeebeebbbbbbebeeeebbbbbbbeeeeeebbbbbeebeeeeb: queryA 127:VIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 226 :****************************************************************************************************: 7cn9_B_1 114:VIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 213 SecStr :EEE S S S S SSSS S TTS EEEE HHHHT SS S BEEE SSSSEEEEEB SS EEE: ExpBur :bbebbbeeeeeeebbeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeebbeeebbeeeeeeeebbbbbbbbeeeebbbbbbeebeeebeeeeeeeeebbeee: queryA 227:VDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 326 :**************** ****************************************************************: 7cn9_B_1 214:VDLPIGINITRFQTLLXXXXXXXXXXXXXXXXXXXXAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 313 SecStr :EEETT EEEEE -------------------- EEEE EEEEEEEEE TTS EEEEEESSSSTTHHHHHHHTSS SEE B S B: ExpBur :beeeeeeebeebebee--------------------eebebbebeeeebbbbbeeeeebeebebbeeeeebebbbeeebeebeebebeeeeeeeeeeeeb: queryA 327:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 426 :***************** ************************************************************************: 7cn9_B_1 314:VRFPNITNLCPFGEVFNXXXXXXXXXXXRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 413 SecStr : S TTT ----------- B HHHHHS TTSSS TT HHHHTT BS B B SS TTTSSSS STIIIII : ExpBur :ebbeeeeeebeeeeeee-----------eeeeeebbbeeeeebebeeeeebebebbeeeeeeeebeebbeebbbebbbebeeeebeeeeeeebbebebee: queryA 427:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 526 :**************** ****** ************** ************** ************************: 7cn9_B_1 414:DDFTGCVIAWNSNNLDXXXXXXYNYLYRXXXXXNLKPFERDISTEIYXXXXXXXXXXXXXNCYFPLQSYGFQPTXXVGYQPYRVVVLSFELLHAPATVCG: 513 SecStr : S SS ------ ----- SS SS ------------- S -- TT B SSS B : ExpBur :eeeebebbbeeebeee------beeeeb-----eeeeebeeeeeeee-------------eeeeeeeeeeeeee--eebebeebeeebeeeeeeeeebbb: queryA 527:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHA: 626 :****************************************************************************************************: 7cn9_B_1 514:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHA: 613 SecStr : SS B GGG B S B S TT S BSSTT B EE TTT EEB B EES GGGTTS B EESS S TTSTTT: ExpBur :eeeeeeeeeeebbebebbbeeeebbbeebeeebeeeeeeeeeeeeeeebbebbeeeebbebeeeeebebbbbbbbeeebeebbbbbeebebeeeeeeeee: queryA 627:DQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 726 :*** *********************************** ****************************************: 7cn9_B_1 614:DQLXXXXXXXXTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICAXXXXXXXXXXXXXXVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 713 SecStr :TT -------- EEETTEEETTS EE SB STT B -------------- SSS EE S SSEEEEEEEEEEEEEEEE: ExpBur :bee--------eeeeeeebebbbbbbbbeeeeeeeeebebeeebbb--------------ebeeebbbbeebeeeeeeeeeeeeeeebbeebebebeebb: queryA 727:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 826 :****************************************************************************************************: 7cn9_B_1 714:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 813 SecStr :EE EEE HHHHHHSS HHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHTT SS S TT TTTS S SSSS HHHHHHHHHS: ExpBur :bbbbbbbbeeebeebbbeebebbeebbeeeeeebeebeeebeebbeebeebbeebbeebeeeeebeeeeebeebebeebbbeeeeeeebbebbebbeeeb: queryA 827:TLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 926 :** **************************************************************************: 7cn9_B_1 814:TLXXXXXXXXXXXXXXXXXXXXXXXXQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 913 SecStr : ------------------------ SSEEE SS HHHHHHHHHHHHHHHHHHTTGGGGSS HHHHHHHHHHHHT HHHHHHHHHHHHHH: ExpBur :ee------------------------eeeebbeeeeeebeeeebbebbbbbbbbbbebbebbeeeeeeeeebeebbbebbeebebeeebbeeeeeebbee: queryA 927:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1026 :*********************************************************** ***************************************: 7cn9_B_1 914:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1013 SecStr :HHHHHHHHHHHHHH TTTTHHHHHHHHHHHHHHHHHHHGGG TTSS SSHHHHHTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :beebbeebeeebeeeeeebeebbeeeeebeebeeebeeeeeeeeebebeebeebeeebeeeebeebbeebbebbbebbeebeeebeeebeebeebbeebb: queryA 1027:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1126 :****************************************************************************************************: 7cn9_B_1 1014:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1113 SecStr :HHHHHHTSS TTSS SSSEEEEE BTTEEEEEEEEEEEEEEEEEE S EEETTEEE BSSSEEEESSS EEEE TTS B BTTTB SBS: ExpBur :ebbeebbbebbeeeebbbeeebbbbbbbbbeebbbbbbbbbeebeeeebebbebbbbeeebbebeebebbbeeeebebbbebeeeeeebbeebbeeeeee: Contact : b bb b queryA 1127:DVVIGIVNNTVYDP:1140 :**************: 7cn9_B_1 1114:DVVIGIVNNTVYDP:1127 SecStr : S TT EE B : ExpBur :eeeeeeeebebeee: |