#WARNING:no index is registered index "YP_009724390.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009724390.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein.
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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(queryA) | C 1 (C) | polymer(polypeptide(L)) [1070 aa] | Spike glycoprotein :SPIKE_SARS2 | |
2 | b | PA 1 (B) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6zoz_C_1 identity=95.0% |
queryA 15:CVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKT: 114 :******************************************************* ***********************************: 6zoz_C_1 6:CVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHXXXXXXXXXXDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKT: 105 SecStr : S EEEEE S EE SSS SEEEEEEEEE TTEEEEEEE ---------- EE SSEEEEEEESS EEEEEEESS EEEE: ExpBur :eeeeeeeeeeeeeebebbebbbbbeeeeeebeeeeebeebbbbbeeebbbbebee----------bbeebebeebbbbbbbbeeeebbbbbbbeebebee: queryA 115:QSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVR: 214 :**************************** ************************ *******************************: 6zoz_C_1 106:QSLLIVNNATNVVIKVCEFQFCNDPFLGXXXXXXXXXXMESEFRVYSSANNCTFEYVSQPFLXXXXXXXGNFKNLREFVFKNIDGYFKIYSKHTPINLVR: 205 SecStr :E EEEEE SS EEEE EEEEEEEEE ---------- S EEES BS EEE ------- EEEEEEEEEETTEEEEEEEEEE S: ExpBur :ebbbbbeeeeeebbbbbebebbebbbbe----------eeeeeebeebeeeeeeeeebeeee-------eebeebbbbbbbeeeeebebbbeebebeebe: queryA 215:DLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQ: 314 :****************************** *****************************************************: 6zoz_C_1 206:DLPQGFSALEPLVDLPIGINITRFQTLLALXXXXXXXXXXXXXXXXXAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQ: 305 SecStr :S S EEEEEEEEE EEEEEE ----------------- EEEEEE EEEEEEEEE TTS EEEEEESSSSHHHHHHHHHT S SEEEE: ExpBur :ebbeeebbbeeeeebebebebeebbbbbbe-----------------ebbbbbbebeebebbbebbeebebeebbbbbbbbbbbbbbeeeebebeebeee: queryA 315:TSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQ: 414 :******************************************************************** *******************************: 6zoz_C_1 306:TSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVCPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQ: 405 SecStr :E S EEEE HHHHHS S STT EEEEE SEE HHHHH SEEEEESS GGGGTT EEEEEEEEEEEEESGGGGGSSTT : ExpBur :beeebbeeeeebbbbeeeeeebebeebbeeeebbbbeebeeeebeebebeeeebeeeeeeebeebeebeeeebeebbbbebebbbbbbbbebbebbbeee: queryA 415:TGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLS: 514 :****************************************************************************************************: 6zoz_C_1 406:TGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLS: 505 SecStr : SHHHHHT TT EEEEEEE TTTT TT S EEE SS TT B SS TTS BTTBB SEEE TTS GGGSEEEEEEEE: ExpBur :eeebbbebbebbeebebbbbbbebbeebbeeebbeebebbeebeeebeeeeeeeeeebeeeeeeebeeeeeeebeebbeebebeeeeeebebbbbbbbeb: queryA 515:FELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQD: 614 :****************************************************************************************************: 6zoz_C_1 506:FELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQD: 605 SecStr :EEESSS EE S SSEEEEEETTEEEEEEEEEE TT EEE TTSSEEEEE SSS EEEEE TT S EEEEE TTT EEEEET: ExpBur :bebeeeebebbbeeeeeeeeeeebbebbbbbeeeebbbeebeeebeeeebbbeeeeeeeebbbbbeeeebbebeebeeeebbbbbbbbeebeebbbbbbe: queryA 615:VNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAI: 714 :************************************************************** **************************: 6zoz_C_1 606:VNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXX----XXXXXXSQSIIAYTMSLGAENSVAYSNNSIAI: 701 SecStr : TTSHHHHHTTTTS HHHHHHHS TT EE SSEEEESSEE SS B SEEEETTEEEEEE ------------ EEEEEEB S TTEEEE: ExpBur :bebeebeeebbbebbeeebeeebeeeeeeebebbbbbebeebeeeeeeebebeeebbbeeee------------eebbbbbeeeeeeeeeeeeeeeeeeb: queryA 715:PTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSK: 814 :****************************************************************************************************: 6zoz_C_1 702:PTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSK: 801 SecStr :EEEEEEEEEEEEEE EEEE HHHHHTSS HHHHHHHHTT THHHHHHHHHHHHHHHHHHHHHHHH SS S STT SSSB TTSSS : ExpBur :beebebebeeebbbbbbbbbebebeebbbeebeebeeebeeeeeebeebeeebeebbebbbebbeebbbebeeeeeeeeeeebeebebeebbeeeeeebe: queryA 815:RSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQN: 914 :****************************************************************************************************: 6zoz_C_1 802:RSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQN: 901 SecStr : BHHHHHHHHHS TTTTT HHHHHH TTTT HHHHHHTTTEEEE SS HHHHHHHHHHHHHHHHHHTTTTTSSS HHHHHHHHHHHTT TH: ExpBur :bbebbbbbbeebeeebeeeeeeeeebeeeeeeeeebbebeeebbeeeeeebeeeebbebbbbbbbbbbebbeebeeeeeeebebbebbbebbeebebeee: queryA 915:VLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIR:1014 :********************************************************************** ***************************: 6zoz_C_1 902:VLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLCPPEAEVQIDRLITGRLQSLQTYVTQQLIR:1001 SecStr :HHHHHHHHHHHHHHHHHHHHHHHHTT SGGGHHHHHHHHHHHHHHHHHHHGGG TTSS S HHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :bbeeeeeebbeebeebbeebeeebeeeeeebeebbebbeebeebbbebeeebeeeeebebbebeebeeebeeeebeebbeebbebbbebbeebbeebeeb: queryA 1015:AAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQI:1114 :****************************************************************************************************: 6zoz_C_1 1002:AAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQI:1101 SecStr :HHHHHHHHHHHHHHHHHHTSS STTTSSSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEE S EESSSEEEEESSSEEEESSS EEEE TTS EE: ExpBur :beebeebbeebbebbeebbbbbbeeeebbbeeebbbbbbbbbbbbbbbbbbbbeeeeeeebeebebbbeeeebbeeeebebbbeeeebbbbbeebeeeee: queryA 1115:ITTDNTFVSGNCDVVIGIVNNTVYDP:1140 :**************************: 6zoz_C_1 1102:ITTDNTFVSGNCDVVIGIVNNTVYDP:1127 SecStr : BTTTEEEEEETTTSSS EE B : ExpBur :bbeebbeeeeeeeeeeebeeeebeee: |