#WARNING:no index is registered index "YP_009724390.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009724390.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein.
CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(queryA) | C 1 (C) | polymer(polypeptide(L)) [1107 aa] | Spike glycoprotein :SPIKE_SARS2 | |
2 | b | MA 1 (7A) | branched(oligosaccharide) | alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 1134N (identity: 100.0 %/96.3 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6xr8_C_1 identity=96.3% |
queryA 14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113 :******************************************************** *************************************: 6xr8_C_1 14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHXXXXXXXKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113 SecStr : EEEEESS B SSS SEEEEEEEEE TTEEEEEEEEE ------- EE EE S EEEEEEESSS EEEEEEESS BSS: ExpBur :eeeebeeeeeeeeeebebebbbbbbbeeeeeeeeeeebeebbbbbeeebebbebee-------ebbbbeebebeebbbbbbbbbeebbbbbbbbeebeee: queryA 114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213 :****************************************************************************************************: 6xr8_C_1 114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213 SecStr :S EEEEEEETTEEEEEEEEEEEEEEEEEEEE S SSS EEEEEEEEEEEEEEEEEEE SSEEEEEEEEEEEETTEEEEEEEEEEEEES: ExpBur :eebbbbbeebebebbbbbbbebbebbbbbbeeeeeeeeeeeeeebbeeeeeeeeeeeebeeeeeebeeeeeebeebebbbbbeeeeebebbbeeeebeee: queryA 214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313 :******************************* ************************************************************: 6xr8_C_1 214:RDLPQGFSALEPLVDLPIGINITRFQTLLALXXXXXXXXXSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313 SecStr :SS S BEEEEEE EEEEEEE --------- S SEEEEEEE EEEEEEEEE TT EEEEEETTSSHHHHHHHHHT S SEEE: ExpBur :eebbeeeebbeeeeebebebebeebbbbbbe---------eeeebebeebbbbbbebeeeebbbebeeebebeebbbbeeebbbbbbbeeeebebeeeee: queryA 314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413 :****************************************************************************************************: 6xr8_C_1 314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413 SecStr :EE SEE B SB HHHHSS SS BGGG EEEEE SEE GGGGTTT SEEEESSS GGGGGG BSSEEEEEEEEEGGGGGGGSSS: ExpBur :ebeebeeeeeeebbbbbeeeeebebeebbeeeebebbbebeeeebeebbbeeeebeeebeeeeeebeebeeeebeebbbbebebbbbbbbbebbebbeee: queryA 414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513 :****************************************************************************************************: 6xr8_C_1 414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513 SecStr : SHHHHHT TT EEEEEEE HHHH TT B EEE SS TT EE SSS SS BTTEE SEEE B TTS TTSSEEEEEEE: ExpBur :eeeebbbebbebbeebebbbbbbebbeebbeeebbeebebbeebeeebeeeeebeeeeeeeeeeeebeeeeeeebeebbeebbbeeebeebebbbbbbbb: queryA 514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613 :****************************************************************************************************: 6xr8_C_1 514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613 SecStr :E SSS SEE S SSEEEEEETTEEEEEEEEE TT EEE TT EEEEE SSS EEEEE S EEEEE TTT S EEEET: ExpBur :bbebeeeebebbbeeeeeebeeeebbebbbbbbeeebebeeeeeebeeeebbbeeeeeeebbbbbbeeeebbebeebeebbbbbbbbbbeebeeebbbbb: queryA 614:DVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIA: 713 :***** ******************************************** *************************: 6xr8_C_1 614:DVNCTXXXXXXXXXXXXXXWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXSQSIIAYTMSLGAENSVAYSNNSIA: 713 SecStr :T -------------- SS SSEEEETTEEEES EE SS SEEEETTEEEEEE ------------ EEEEEE TTEEE: ExpBur :ebebe--------------eebeeeeeeebebeebbbbebeebeeeeeeebebeeebbbbeee------------eeebbbbeeeeeeeeeeeeeeeeee: queryA 714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813 :****************************************************************************************************: 6xr8_C_1 714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813 SecStr :EESSEEEEEEEEEEE EEEE HHHHHSTT HHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHTT SS SS STT GGGTSB TTSSS: ExpBur :bbeebebebeeebbbbbbbbbebebeebbbeebeebeebbeeeeeebeebeebbeebbebbeebbeebbbebeeebeeeeeeebeebebebbbeeeeeeb: queryA 814:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913 :****************************************************************************************************: 6xr8_C_1 814:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913 SecStr : BHHHHHHHHHS S TT SGGGSTHHHHH HHHHHHHTTEEEE SS HHHHHHHHHHHHHHHHHHTTHHHHSS HHHHHHHHHHHTT T: ExpBur :ebbebbebbbeebeeeeeeeeeeeeebeeeeeeeeebbebeeebbebeeeebeeeebbebbbbbbbbbbebbeebeeeeeeebebbebbbebbeebebee: queryA 914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013 :****************************************************************************************************: 6xr8_C_1 914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013 SecStr :HHHHTTHHHHHHHHHHHHHHHHHHHHH SGGGHHHHHHHHHHHHHHHHHHHGGG TTSS S HHHHHTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :ebbeeeeeebbeebeebbbebbeebeeeeeebeebbebbeebeebbeebbeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebee: queryA 1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113 :****************************************************************************************************: 6xr8_C_1 1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113 SecStr :HHHHHHHHHHHHHHHHHHHTSS STTSSSSSEEEEEEEEEETTEEEEEEEEEEE EEEEE S EESSSSEEEESSSEEEESSS EEEE TTS E: ExpBur :bbeebeebbeebbebbeebbbbbbeeeebbbeeebbbbbbbbbbbbbbbbbbbbeeeeeeebebbebbbeeeebbebeebbbbbeeeebbbbbebbbeee: queryA 1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSP:1162 :*************************************************: 6xr8_C_1 1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSP:1162 SecStr :E BTTTEEE S TTTSTT EE B THHHHHHHHHHHHHHHHHHHH : ExpBur :ebbeeebeeeeeeeebeeeeeeebeeeeeeeeeeeeeeeeeeeeeeeee: Contact : b |