#WARNING:no index is registered index "YP_009724390.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009724390.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein. [pdbjlvh2]Protein Model on 6xr8_B_1_W_1

Protein Model on 6xr8_B_1_W_1 (TEMPLATE: 6xr8 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(queryA) B 1 (B) polymer(polypeptide(L)) [1107 aa] Spike glycoprotein :SPIKE_SARS2
2 b W 1 (GA) branched(oligosaccharide) alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 282N (identity: 100.0 %/96.3 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6xr8_B_1 identity=96.3%
queryA        14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113
                :********************************************************       *************************************:
6xr8_B_1      14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHXXXXXXXKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113
SecStr          :             EEEEESS   B SSS    SEEEEEEEEE  TTEEEEEEEEE ------- EE    EE  S EEEEEEESSS EEEEEEESSSBSS:    
ExpBur          :eeeebeeeeeeeeeebebebbbbbbbeeeeeeeeeeebeebbbbbeeebebbebee-------ebbbbeebebeebbbbbbbbbbebbbbbbbbbebeee:    

queryA       114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213
                :****************************************************************************************************:
6xr8_B_1     114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213
SecStr          :S EEEEEE SS EEEEEEEEEEEEEEEEEEE   SSSS EEEEEEEEEEEEEEEEEEE            SS  EEEEEEEEEETTEEEEEEEEEE   S:    
ExpBur          :eebbbbbebbebebbbbbebebbebbbbbbeeeeeeeeeeeeeebbeeeeeeeeeeeebeeeeeebeeeeeebeebebbbbbeeeeebebbbeeeebeee:    

queryA       214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313
                :*******************************         ************************************************************:
6xr8_B_1     214:RDLPQGFSALEPLVDLPIGINITRFQTLLALXXXXXXXXXSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313
SecStr          :SS       BEEEEEE       EEEEEEB ---------  S     SEEEEEEE EEEEEEEEE TT  EEEEEETTSSHHHHHHHHHT S   SEEE:    
ExpBur          :eebbeeeebbeeeeebebebebeebbbbbbb---------eeeebebeebbbbbbebeeeebbbebeeebebeebbbbeeebbbbbbbeeeebebeeeee:    
Contact         :                                                                    b                               

queryA       314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413
                :****************************************************************************************************:
6xr8_B_1     314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413
SecStr          :EE        EEEEE     SB  HHHHSS S   BGGG EEEEE SEE  GGGGTTT   SEEEESSS GGGGGG EESSEEEEEEEEEGGGGGGGSTT:    
ExpBur          :ebeebeeeeeeebbbbbeeeeebebeebbeeeebebbbebeeeebeebbbeeeebeeebeeeeeebeebeeeebeebbbbebebbbbbbbbebbebbeee:    

queryA       414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513
                :****************************************************************************************************:
6xr8_B_1     414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513
SecStr          :  SHHHHHT    TT  EEEEEEE HHHH  SS BTT EEE   SS   TT        EE SSS   SS BTTEE SEEE  B TTS TTSSEEEEEEE:    
ExpBur          :eeeebbbebbebbeebebbbbbbebbeebbeeebbeebebbeebeeebeeeeebeeeeeeeeeeeebeeeeeeebeebbeebbbeeebeebebbbbbbbb:    

queryA       514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613
                :****************************************************************************************************:
6xr8_B_1     514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613
SecStr          :EE  SSS  SEE S        SSEEEEEETTEEEEEEEEE      TT  EEE TT  EEEEE SSS  EEEEE S    EEEEE  TTT S  EEEET:    
ExpBur          :bbebeeeebebbbeeeeeebeeeebbebbbbbbeeebebeebeeebeeeebbbeeeeeeeebbbbbeeeebbebeebeebbbbbbbbbbeebeeebbbbe:    

queryA       614:DVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIA: 713
                :*****              ********************************************            *************************:
6xr8_B_1     614:DVNCTXXXXXXXXXXXXXXWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXSQSIIAYTMSLGAENSVAYSNNSIA: 713
SecStr          :T    --------------  SSS  SSEEEETTEEEES EE SS    SEEEETTEEEEEE ------------  EEEEEE            TTEEE:    
ExpBur          :ebebe--------------eebeeeeeeebebeebbbbebeebeeeeeeebebeeebbbbeee------------eeebbbbeeeeeeeeeeeeeeeeee:    

queryA       714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813
                :****************************************************************************************************:
6xr8_B_1     714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813
SecStr          :EES EEEEEEEEEEE    EEEE HHHHHTTT HHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTT SS     SS  STT   TTTSB TTSSS:    
ExpBur          :bbeebebebeeebbbbbbbbbebebeebbbeebeebeeebeeeeeebeebeebbeebbebbeebbeebbbebeeebeeeeeeebeebebebbbeeeeeeb:    

queryA       814:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913
                :****************************************************************************************************:
6xr8_B_1     814:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913
SecStr          :  BHHHHHHHHHS  S  SS   STTTSTHHHHH HHHHHHHTTEEEE  SS HHHHHHHHHHHHHHHHHHTTHHHHSS     HHHHHHHHHHHTT  T:    
ExpBur          :ebbebbebbbeebeeeeeeeeeeeeebeeeeeeeeebbebeeebbebeeeebeeeebbebbbbbbbbbbebbeebeeeeeeebebbebbbebbeebebee:    

queryA       914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013
                :****************************************************************************************************:
6xr8_B_1     914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013
SecStr          :HHHHTTHHHHHHHHHHHHHHHHHHHHH TTTTHHHHHHHHHHHHHHHHHHHGGG  TTSS SSHHHHHTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :ebbeeeeeebbeebeebbbebbeebeeeeeebeebbebbeebeebbbebbeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbbebbeebee:    

queryA      1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113
                :****************************************************************************************************:
6xr8_B_1    1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113
SecStr          :HHHHHHHHHHHHHHHHHHHTSS   STTTTSSSEEEEEEEEEETTEEEEEEEEEEE  EEEEE  S EESSSEEEEESSSEEEE SS EEEE TTS   E:    
ExpBur          :bbeebeebbeebbebbeebbbbbbeeeebbeeeebbbbbbbbbbbbbbbbbbbbeeeeeeebebbebbbeeeebbebeebbbbbeeeebbbbbeebbeee:    

queryA      1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSP:1162
                :*************************************************:
6xr8_B_1    1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSP:1162
SecStr          :E BTTTEEEEEETTSSTT EE   B THHHHHHHHHHHHHHHHHHHH  :    
ExpBur          :ebbeeebeeeeeeeeeeeeeeeebeeeeeeeeeeeeeeeeeeeeeeeee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123