#WARNING:no index is registered index "YP_009724390.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009724390.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein. [pdbjlvh2]Protein Model on 6xr8_A_1_M_1

Protein Model on 6xr8_A_1_M_1 (TEMPLATE: 6xr8 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(queryA) A 1 (A) polymer(polypeptide(L)) [1107 aa] Spike glycoprotein :SPIKE_SARS2
2 b M 1 (h) branched(oligosaccharide) alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 801N 803S 804Q (identity: 100.0 %/96.3 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6xr8_A_1 identity=96.3%
queryA        14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113
                :********************************************************       *************************************:
6xr8_A_1      14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHXXXXXXXKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113
SecStr          :             EEEEESS   B SSS    SEEEEEEEEE  TTEEEEEEEEE ------- EE    EE  S EEEEEEESSS EEEEEEESSSBSS:    
ExpBur          :eebebeeeeeeeeeebebebbbbbbbeeeebeeeeeebeebbbbbeeebebbebee-------ebbbbeebebeebbbbbbbbbeebbbbbbbbeebeee:    

queryA       114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213
                :****************************************************************************************************:
6xr8_A_1     114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213
SecStr          :S EEEEEE SS EEEEEE  BEEEEEEEEEE S SSSS EEEEEEEES   SEEEEEE            SSEEEEEEEEEEEETTEEEEEEEEEEEEES:    
ExpBur          :eebbbbbebbebebbbbbebebbebbbbbbeeeeeeeeeebeeebbeeeeeeeeeeeebeeeeeebeeeeeebeebebbbbbeeeeebebbbeeeebeee:    

queryA       214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313
                :*******************************         ************************************************************:
6xr8_A_1     214:RDLPQGFSALEPLVDLPIGINITRFQTLLALXXXXXXXXXSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313
SecStr          :SS       BEEEEEE       EEEEEEB ---------  S     SEEEEEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHHT SS  SEEE:    
ExpBur          :eebbeeeebbeeeeebebebebeebbbbbbb---------eeeebebeebbbbbbebeeeebbbebeeebebeebbbbeeebbbbbbbeeeebebeeeee:    

queryA       314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413
                :****************************************************************************************************:
6xr8_A_1     314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413
SecStr          :EE   B    EEEEE     SB  HHHHHS SS  BSTT EEEEE SEE  GGGGTTT   SEEEESSS GGGGGG EESSEEEEEEEEEGGGGGGGSSS:    
ExpBur          :ebeebeeeeeeebbbbbebeeebebeebbeeeebebbbebeeeebeebbbeeeebeeebeeeeeebeebeeeebeebbbbebebbbbbbebebbebbeee:    

queryA       414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513
                :****************************************************************************************************:
6xr8_A_1     414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513
SecStr          :  SHHHHHT    TT  EEEEEEE HHHH  TT B   EEE   SS   TT        EE SSS   SS BTTEE SEEE  B TTS TTTSEEEEEEE:    
ExpBur          :eeeebbbebbebbeebebbbbbbebbeebbeeebbeebebbeebeeebeeeeebeeeeeeeeeeeebeeeeeeebeebbeebbbeeebeebebbbbbbbb:    

queryA       514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613
                :****************************************************************************************************:
6xr8_A_1     514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613
SecStr          :EE  SSS   EE S        SSEEEEEETTEE  EEEEE      TT  EEE TT  EEEEE SSS  EEEEE SB   EEEEE  TTT S  EEEET:    
ExpBur          :bbebeeeebebbbeeeeeebbeeebbebbbbbbeeebebeebeeebeeeebbbeeeeeeeebbbbbeeeebbebeebeebbbbbbbbbbeebeeebbbbb:    

queryA       614:DVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIA: 713
                :*****              ********************************************            *************************:
6xr8_A_1     614:DVNCTXXXXXXXXXXXXXXWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXSQSIIAYTMSLGAENSVAYSNNSIA: 713
SecStr          :T    --------------   SS  SSEEEETTEEEES EE SS    SEEEETTEEEEEE ------------  EEEEEE            TTEEE:    
ExpBur          :ebebe--------------eebeeeeeeebebeebbbbebeebeeeeeeebebeeebbbbeee------------eeebbbbeeeeeeeeeeeeeeeeee:    

queryA       714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813
                :****************************************************************************************************:
6xr8_A_1     714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813
SecStr          :EES EEEEEEEEEEE    EEEE HHHHHHTT HHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTT SS     SS  STT   TTTSB TTSSS:    
ExpBur          :bbeebebebeeebbbbbbbbbebebeebbbeebeebeebbeeeeeebeebeeebeebbebbeebbeebbbebeeeeeeeeeeebeebebebbbeeeeeeb:    
Contact         :                                                                                       b bb         

queryA       814:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913
                :****************************************************************************************************:
6xr8_A_1     814:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913
SecStr          :  BHHHHHHHHHS  S STT   SGGGSTHHHHH HHHHHHHTTEEEE  SS HHHHHHHHHHHHHHHHHHTTHHHHSS     HHHHHHHHHHHTT  T:    
ExpBur          :ebbebbebbbeebeeeeeeeeeeeeebeeeeeeeeebbebeeebbebeeeebeeeebbebbebbbbbbbebbeebeeeeeeebebbebbbebbeebebee:    

queryA       914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013
                :****************************************************************************************************:
6xr8_A_1     914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013
SecStr          :HHHHTTHHHHHHHHHHHHHHHHHHHHH S TTHHHHHHHHHHHHHHHHHHHGGG  TTSS S HHHHHTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :ebbeeeeeebbeebeebbeebbeebeeeeeebeebbebbeebeebbbebbeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbbebbeebee:    

queryA      1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113
                :****************************************************************************************************:
6xr8_A_1    1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113
SecStr          :HHHHHHHHHHHHHHHHHHTTSS   STTTTSSSEEEEEEEEEETTEEEEEEEEEEE  EEEEE  S EESSSS EEESSSEEEESSS EEEE TTS   E:    
ExpBur          :bbeebeebbeebbebbeebbbbbbeeeebbeeeebbbbbbbbbbbbbbbbbbbbeeeeeeebebbebbbeeeebbebeebbbbbeeeebbbbbeebbeee:    

queryA      1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSP:1162
                :*************************************************:
6xr8_A_1    1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSP:1162
SecStr          :E BTTTEEE S TTTSTT EE   B THHHHHHHHHHHHHHHHHHHH  :    
ExpBur          :ebbeeebeeeeeeeeeeeeeeeebeeeeeeeeeeeeeeeeeeeeeeeee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123