#WARNING:no index is registered index "YP_009724390.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009724390.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein.
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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(queryA) | C 1 (C) | polymer(polypeptide(L)) [1048 aa] | Spike glycoprotein :SPIKE_SARS2 | |
2 | b | P 1 (P) | branched(oligosaccharide) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 338F 339G 343N (identity: 100.0 %/93.3 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6xm4_C_1 identity=93.3% |
queryA 27:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 126 :******************************************* ***********************************************: 6xm4_C_1 14:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHXXXXXXXXXXDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 113 SecStr : EEE S EE SS SS EEEEEEEE TTEEE B ---------- B SSEEEEEE SSS EEEEEEES SSSS EEEEE SSSE: ExpBur :eeeebbebbbbbeeeeebeeeeeebeebbbbbebebeebeeee----------ebeebebeebbbbbbbbeeeebebbbbbeebeeeeebbbbeeeeeee: queryA 127:VIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 226 :***************** ************** *****************************************: 6xm4_C_1 114:VIKVCEFQFCNDPFLGVXXXXXXXXXXXXXXXVYSSANNCTFEYVSXXXXXXXXXXXXXFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 213 SecStr :EEE SS --------------- S EEE ------------- EEEEE TT EEEEEE S SS SS EEEEE: ExpBur :bbbbbbbebeeebeebe---------------eeeeeeeeeeeeee-------------eeebebbbbbeeeeebebbeeeeebeeeeebeeeebbbeee: queryA 227:VDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 326 :************************* ***************************************************************: 6xm4_C_1 214:VDLPIGINITRFQTLLALHRSYLTPXXXXXXXXXXXXAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 313 SecStr :EEE EEEEEE SS ------------ EEEEE EEEEEEEEE SSS EEEEEETTSSHHHHHHHHTTSS SEEEEEEEEE EE : ExpBur :eebebeeebeebbbbbbeeeeeebe------------ebbbbebeebebbbebeeeeebeebbbbebbbbbbbbbeeeebebeeeebebeebeeeeeeeb: queryA 327:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 426 :****************************************************************************************************: 6xm4_C_1 314:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 413 SecStr : B SB HHHHT S SSS EEEEE SSB TTTSSSSS SEEE SSS GGGGGG EEEEEEEEEEE SS TTSSSSS STTTTTT : ExpBur :bbbeeeeeebebeebbeeeebebbebbeeeebeebbbebeebeeeeeeeeeebeebeeeebbeebbbebebbbbbbebebeebbeeeeebebbbbbbebe: Contact : bb b queryA 427:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 526 :****************** ********************************************************************************: 6xm4_C_1 414:DDFTGCVIAWNSNNLDSKXXGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 513 SecStr :SS S EEEEE SSS -- EEE SS TT EESSSS SS SSEE SEEE TT TTSS EEEEE EEEESSS SBB : ExpBur :eebebbbbbbebeeebbe--ebeebebbbebeeebeeeeeeeeeeeeeeeeeebeeeeeeebeebbeebebeeeeeebebbbbbbbbbbeeeebebebbb: queryA 527:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHA: 626 :****************************************************************************************************: 6xm4_C_1 514:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHA: 613 SecStr :S SS EE BBSS B BEEEE TT EEE TTS EEEEE SSS EEEEE EEEEEEEE TTT EEEEET TTSHHHHTTT: ExpBur :eeeeeeeeeeebbebbbbbbeeebebeebeeebeeeebbeeeeeeeeebbbbbeeeebbebeeeeebbbbbbbbbeeebeebbbbbeebebeebeebbee: queryA 627:DQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 726 :************************************************** **************************************: 6xm4_C_1 614:DQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXSQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 713 SecStr :TTS TTTTGGG SS EEE SSEEEES EE S SEEEETTEEEEEE ------------ EEEEEE TTEEEEEEEEEEEEEEEE: ExpBur :eeebeebeebbeeeeebebeebbbbebeeeeeeeeeebebeeebbbbeee------------eeebbbbeeeeeeeeeeeeeeeeeebbeebebebeeeb: queryA 727:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 826 :****************************************************************************************************: 6xm4_C_1 714:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 813 SecStr :EE EEE HHHHHSTT HHHHTTGGGG SHHHHHHHHHHHHHHHHHHHHHHHH SS SS STT TTTS SSSSS HHHHHHTTS : ExpBur :bbbbbbbbebebeebbbeebeebeebbeeeeeebeebeeebeebbeebbebbeebbbebeeeeeeeeeeebeebebeebbeeeeeeeebbebbbbbbeeb: queryA 827:TLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 926 :*************** ****************************************************************************: 6xm4_C_1 814:TLADAGFIKQYGDCLXXXXXXXXXCAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 913 SecStr : S SS STTGGGGT --------- SSSEEE SS HHHHHHHHHHHHHHHHHHTTSTTSSS HHHHHHHHHHTTT SHHHHHSHHHHHHH: ExpBur :ebeeebbbeebeeee---------eeeeeebbeeeeeebeeeebbebbebbbbbbbebbeebeeeeeeeeebbebbbebbeebebeeebbeeeeeebbee: queryA 927:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1026 :*********************************************************** ***************************************: 6xm4_C_1 914:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1013 SecStr :HHHHHHHHHHHHHSS HHHHHHHHHHHHHHHHHHHTTS TTSS S GGGTTTSS TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :beebbeebeeebeeeeeebeebbebbeebbebbeebeeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeebbeebb: queryA 1027:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1126 :****************************************************************************************************: 6xm4_C_1 1014:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1113 SecStr :HHHHHHTSS STTTSSSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEES EESSSEEEEESSSEEEESSSSEEEE SSS B BTTTEEEEEET: ExpBur :ebbeebbbebbeeeebbeeeebbbbbbbbbeebbbbbbbbbeebeeeebeebebbbeeeebbeeeebebbbeeeebbbbbeebeeeeebbeeebeeeeee: queryA 1127:DVVIGIVNNTVYDPLQPELDS:1147 :*********************: 6xm4_C_1 1114:DVVIGIVNNTVYDPLQPELDS:1134 SecStr :TSSTT EE B SSSTT : ExpBur :eeeeeeeeeebeeeeeeeeee: |