#WARNING:no index is registered index "YP_009724390.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009724390.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein. [pdbjlvh2]Protein Model on 6xey_A_1_J_1

Protein Model on 6xey_A_1_J_1 (TEMPLATE: 6xey )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(queryA) A 1 (A) polymer(polypeptide(L)) [1034 aa] Spike glycoprotein :SPIKE_SARS2
2 b J 1 (D) branched(oligosaccharide) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 481N (identity: 100.0 %/92.1 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6xey_A_1 identity=92.1%
queryA        27:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 126
                :***********************************************      ***********************************************:
6xey_A_1      27:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTXXXXXXDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 126
SecStr          :  EE TT  EE  SS   SS EEEEEEEE  TT EE  B TT SS  ------    EE SS EEEEEE SS  EEEEEEESSSSSSS EEEEEB SS E:    
ExpBur          :eebebebbbbbbbeeeeeeeeeeebeebbbbbeeebeebebbeeeee------ebeebebeebbbbbbebeeebbebbbbbbebbeeeebbbbbbbeeeb:    

queryA       127:VIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 226
                :*****************             ********************          ****************************************:
6xey_A_1     127:VIKVCEFQFCNDPFLGVXXXXXXXXXXXXXFRVYSSANNCTFEYVSQPFLXXXXXXXXXXKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 226
SecStr          :EEEE    B SS     -------------   SBSS   SEEEEE    ---------- EEEEEEEEEETTEEEEEEEEEE    SS  SS  EEEEE:    
ExpBur          :ebebbbbebbebbebbe-------------eebbbeeeeeeeeeeeeebe----------eebbbbbbbeeeebbebbbeeeebeeeeebeeeebbbbee:    

queryA       227:VDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 326
                :****************************************************************************************************:
6xey_A_1     227:VDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 326
SecStr          :EEE       EEEEEE  SS    TT SS S       EEEEE EEEEEEEEE SSS EEE  BTTT HHHHHHHHHT SS  EEEEEEEEEE   SEE :    
ExpBur          :bebebebebeebbbbbbbebebeeeeeeeeeeeeeebbbbbbebeeeebbbebeeebebeebbbbeeeebbebbbeeeebebeebebebeeeeeeeeeeb:    

queryA       327:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 426
                :****************************************************************************************************:
6xey_A_1     327:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 426
SecStr          : B  S   B THHHHTS S   BSTT EEEEE SEE  THHHHT TT S EEEESS GGGGGG  BSEEEEEEEEE SGGGGTSSTT  SHHHHHT    :    
ExpBur          :ebbeeeeeebebeebbeeeebebbbebeeeebeebbbebeebbeeeebeeeebeebeeeebeeebbeebebbbbbbbbebeeebbeeeeebbbeebbbbe:    

queryA       427:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 526
                :****************************************************************************************************:
6xey_A_1     427:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 526
SecStr          :TT  EEEEEEE TTTS  SS     EEE   SS   TT           SSS  SS  SSSS   EEE    TTS TTTS EEEEEEEEE  SS  SEE :    
ExpBur          :eebebbbbbbebbeebbbeebbeebebbeeeeeebeeebeeeeeebeeeeeeebeeeeeebbeebbeeeebeeeeeeeebbbbbbbbbbbeeebebbbbb:    
Contact         :                                                      b                                             

queryA       527:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHA: 626
                :**********************************************************************************************      :
6xey_A_1     527:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVXXXXXX: 626
SecStr          :         SSEEEE BSS  EEEEEEE      TT  EEE GGG EEEEE TTT  EEEEE   EEEEEEEEE TTT    EEEEET  TT  ------:    
ExpBur          :eeeeeeeeeeebbebbbbbbeeebbbeebebebeeeeeebeeeeeeeebbbbbeeeebbbbeebeebbbbbbbbbbeeeeebbbbeeebeeeee------:    

queryA       627:DQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 726
                :             *************************************             *************************************:
6xey_A_1     627:XXXXXXXXXXXXXSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXXQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 726
SecStr          :-------------  EEE SSEEEES EE S     SEEEETTEEEEE  -------------  EEEEE   S        TTEEEEEEEEEEEEEEEE:    
ExpBur          :-------------eeeeebeebbbeebeebeeeeeeebebeeebbbbeee-------------eebbbbeeeeeeeeeeeeeeeeeebbeebebebeeeb:    

queryA       727:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 826
                :****************************************************************************************************:
6xey_A_1     727:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 826
SecStr          :EE    EEEE HHHHHTTT HHHHHHHGGG THHHHHHHHHHHHHHHHHHHHHHHH   SS     SS  STT   TTTSB TTSSTT BHHHHHHHHH :    
ExpBur          :bbbbbebbbbebebbbbeebeebeebbeeeeeebeebeeebeebbeebbebbeebbeebeeebeeeeeeebeebebeebbeeeebeebbbebbeebbebb:    

queryA       827:TLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 926
                :**                         *************************************************************************:
6xey_A_1     827:TLXXXXXXXXXXXXXXXXXXXXXXXXXKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 926
SecStr          :  -------------------------  SSEEEE  SS HHHHHHHHHHHHHHHHHHTTHHHHSS     HHHHHHHHHHHTT  HHHHHHTHHHHHHH:    
ExpBur          :ee-------------------------eeeebeeeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebbebbbebbeebebeeebbeeeeeebbee:    

queryA       927:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1026
                :***********************************************************  ***************************************:
6xey_A_1     927:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1026
SecStr          :HHHHHHHHHHHHHH GGGGHHHHHHHHHHHHHHHHHHHGGG  TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :beebbeebeeebeeeeeebeebbebbeebeebbeebbeebeeeeebeeeebeebbeeeeeeebeebbeebbebbbebbeebbeebeebbeebeebbeebb:    

queryA      1027:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1126
                :****************************************************************************************************:
6xey_A_1    1027:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1126
SecStr          :HHHHHHTSS   STTSSSSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEES EEETTEEEEESSSEEEESSS  EEE SSS   B  BSSSEEE S T:    
ExpBur          :ebbeebbbbebeeeebbbeeebbbbbbbbbeebbbbbbbbbeeeeebebeebebbbeeeebbeeeeeebbbeeeebbbbbebbebeeebbeebbeeeeeb:    

queryA      1127:DVVIGIVNNTVYDPLQPELD:1146
                :********************:
6xey_A_1    1127:DVVIGIVNNTVYDPLQPELD:1146
SecStr          :TSSTT EE   B TTTGGG :    
ExpBur          :eebeeeeeeebeeeeeeeee:    


Input Residue Numbers for Focused Sites

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