#WARNING:no index is registered index "YP_009724390.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009724390.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein.
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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(queryA) | A 1 (A) | polymer(polypeptide(L)) [1034 aa] | Spike glycoprotein :SPIKE_SARS2 | |
2 | b | J 1 (D) | branched(oligosaccharide) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 481N (identity: 100.0 %/92.1 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6xey_A_1 identity=92.1% |
queryA 27:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 126 :*********************************************** ***********************************************: 6xey_A_1 27:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTXXXXXXDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 126 SecStr : EE TT EE SS SS EEEEEEEE TT EE B TT SS ------ EE SS EEEEEE SS EEEEEEESSSSSSS EEEEEB SS E: ExpBur :eebebebbbbbbbeeeeeeeeeeebeebbbbbeeebeebebbeeeee------ebeebebeebbbbbbebeeebbebbbbbbebbeeeebbbbbbbeeeb: queryA 127:VIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 226 :***************** ******************** ****************************************: 6xey_A_1 127:VIKVCEFQFCNDPFLGVXXXXXXXXXXXXXFRVYSSANNCTFEYVSQPFLXXXXXXXXXXKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 226 SecStr :EEEE B SS ------------- SBSS SEEEEE ---------- EEEEEEEEEETTEEEEEEEEEE SS SS EEEEE: ExpBur :ebebbbbebbebbebbe-------------eebbbeeeeeeeeeeeeebe----------eebbbbbbbeeeebbebbbeeeebeeeeebeeeebbbbee: queryA 227:VDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 326 :****************************************************************************************************: 6xey_A_1 227:VDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 326 SecStr :EEE EEEEEE SS TT SS S EEEEE EEEEEEEEE SSS EEE BTTT HHHHHHHHHT SS EEEEEEEEEE SEE : ExpBur :bebebebebeebbbbbbbebebeeeeeeeeeeeeeebbbbbbebeeeebbbebeeebebeebbbbeeeebbebbbeeeebebeebebebeeeeeeeeeeb: queryA 327:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 426 :****************************************************************************************************: 6xey_A_1 327:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 426 SecStr : B S B THHHHTS S BSTT EEEEE SEE THHHHT TT S EEEESS GGGGGG BSEEEEEEEEE SGGGGTSSTT SHHHHHT : ExpBur :ebbeeeeeebebeebbeeeebebbbebeeeebeebbbebeebbeeeebeeeebeebeeeebeeebbeebebbbbbbbbebeeebbeeeeebbbeebbbbe: queryA 427:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 526 :****************************************************************************************************: 6xey_A_1 427:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 526 SecStr :TT EEEEEEE TTTS SS EEE SS TT SSS SS SSSS EEE TTS TTTS EEEEEEEEE SS SEE : ExpBur :eebebbbbbbebbeebbbeebbeebebbeeeeeebeeebeeeeeebeeeeeeebeeeeeebbeebbeeeebeeeeeeeebbbbbbbbbbbeeebebbbbb: Contact : b queryA 527:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHA: 626 :********************************************************************************************** : 6xey_A_1 527:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVXXXXXX: 626 SecStr : SSEEEE BSS EEEEEEE TT EEE GGG EEEEE TTT EEEEE EEEEEEEEE TTT EEEEET TT ------: ExpBur :eeeeeeeeeeebbebbbbbbeeebbbeebebebeeeeeebeeeeeeeebbbbbeeeebbbbeebeebbbbbbbbbbeeeeebbbbeeebeeeee------: queryA 627:DQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 726 : ************************************* *************************************: 6xey_A_1 627:XXXXXXXXXXXXXSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXXQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 726 SecStr :------------- EEE SSEEEES EE S SEEEETTEEEEE ------------- EEEEE S TTEEEEEEEEEEEEEEEE: ExpBur :-------------eeeeebeebbbeebeebeeeeeeebebeeebbbbeee-------------eebbbbeeeeeeeeeeeeeeeeeebbeebebebeeeb: queryA 727:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 826 :****************************************************************************************************: 6xey_A_1 727:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 826 SecStr :EE EEEE HHHHHTTT HHHHHHHGGG THHHHHHHHHHHHHHHHHHHHHHHH SS SS STT TTTSB TTSSTT BHHHHHHHHH : ExpBur :bbbbbebbbbebebbbbeebeebeebbeeeeeebeebeeebeebbeebbebbeebbeebeeebeeeeeeebeebebeebbeeeebeebbbebbeebbebb: queryA 827:TLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 926 :** *************************************************************************: 6xey_A_1 827:TLXXXXXXXXXXXXXXXXXXXXXXXXXKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 926 SecStr : ------------------------- SSEEEE SS HHHHHHHHHHHHHHHHHHTTHHHHSS HHHHHHHHHHHTT HHHHHHTHHHHHHH: ExpBur :ee-------------------------eeeebeeeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebbebbbebbeebebeeebbeeeeeebbee: queryA 927:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1026 :*********************************************************** ***************************************: 6xey_A_1 927:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1026 SecStr :HHHHHHHHHHHHHH GGGGHHHHHHHHHHHHHHHHHHHGGG TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :beebbeebeeebeeeeeebeebbebbeebeebbeebbeebeeeeebeeeebeebbeeeeeeebeebbeebbebbbebbeebbeebeebbeebeebbeebb: queryA 1027:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1126 :****************************************************************************************************: 6xey_A_1 1027:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1126 SecStr :HHHHHHTSS STTSSSSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEES EEETTEEEEESSSEEEESSS EEE SSS B BSSSEEE S T: ExpBur :ebbeebbbbebeeeebbbeeebbbbbbbbbeebbbbbbbbbeeeeebebeebebbbeeeebbeeeeeebbbeeeebbbbbebbebeeebbeebbeeeeeb: queryA 1127:DVVIGIVNNTVYDPLQPELD:1146 :********************: 6xey_A_1 1127:DVVIGIVNNTVYDPLQPELD:1146 SecStr :TSSTT EE B TTTGGG : ExpBur :eebeeeeeeebeeeeeeeee: |