Protein Model on 7l1f_A_1_E_1
(TEMPLATE: 
7l1f
)Protein Model on 7l1f_A_1_E_1
(TEMPLATE: 7l1f
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[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(queryA) | A 1 (A) | polymer(polypeptide(L)) [832 aa] | RNA-directed RNA polymerase :R1AB_SARS2 | |
| 2 | b | E 1 (T) | polymer(polyribonucleotide) | RNA (5'-R(P*AP*UP*UP*UP*UP*AP*AP*UP*AP*GP*CP*UP*UP*CP*UP*UP*AP*G)-3') | 4888N 4892K 4893S 4935N 4950A 4982G 4984S 4987Y 5074S 5075G 5076D 5077A 5081Y 5316M (identity: 100.0 %/92.7 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:7l1f_A_1 identity=92.7% |
queryA 4424:YRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTMADLVYAL:4523
:******************* ***************** *************:
7l1f_A_1 1:YRAFDIYNDKVAGFAKFLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETIYNLLKDCPAVAKHDXXXXXXXXXXXXXXXXXXLTKYTMADLVYAL: 100
SecStr : EEEEE SS EEEEE --------------------------------- TTTTTSTTSTTB ------------------ SS HHHHHHTT:
ExpBur :eebbbbeeeebbbbbeeee---------------------------------eebeeebeeeebbeeee------------------eeebbbbbbbbbb:
queryA 4524:RHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGV:4623
:****************************************************************************************************:
7l1f_A_1 101:RHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGV: 200
SecStr :TS TTS HHHHHHHHHTTS SSSSSSSS S TTT TTHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTEEEE GGGB SSS B S EE TT :
ExpBur :bebeeeebeebeebbeeeebbeeebbeeeebbbbeebeebeebbeebbeebbebbeebbebbeebeeebbebebebbbbbbebebeeeeebeeeeeeebe:
queryA 4624:PVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVR:4723
:****************************************************************************************************:
7l1f_A_1 201:PVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVR: 300
SecStr :EE HHHHHHHHHHHHHHTTTSSSSBSSS SSS B TT HHHHHHHHHHSTT SS SSSSS SSSHHHHHHHHHHHHTTTS TTS EE :
ExpBur :bebbbbbbbbbbbbbbbebbebbbbeeeeeeeeeeeeeeeeeebeebbeebbeebbeebeeebebebeebeebebbbbbbbbbbbbbebbeeebbeebee:
queryA 4724:KIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFKE:4823
:****************************************************************************************************:
7l1f_A_1 301:KIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFKE: 400
SecStr :EEEETTEEEE EEE SSS EEE S SB SS HHHHHHHHH THHHHTTSEE SSS EEEESSS EE HHHHHHHTTTT S:
ExpBur :ebebeeeeeebbbbbbbebbbbbebeeeeeeeeeeeebeebbeebbbeebeeeeeeeebeebebebebbeeeeeeeeebeeeeebeebeebbeeeeeeee:
queryA 4824:GSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYT:4923
:****************************************************************************************************:
7l1f_A_1 401:GSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYT: 500
SecStr :SSS S B TTHHHHHHGGGGG SHHHHHHHHHGGGGS S GGG S S BTGGGT TTHHHHSS HHHHHHHHHHT:
ExpBur :eeeeebeeeeeeeeeebebebbeebeebeebbbbbbbbebbbbbbeebbeebebbbbebeeeeeeeeeeebbbbbeeebebeebeeebeeeebeebbeeb:
Contact : b bb
queryA 4924:KRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLR:5023
:****************************************************************************************************:
7l1f_A_1 501:KRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLR: 600
SecStr :TT BBB BSSS B HHHHHHHHHHHHHHHHHHTT SSSSB S STTTHHHHHHHHHTSS SSEEE TTSTT HHHH:
ExpBur :bebbbbbbbebeeeeeeeeeeebebebebbbbbbbbbebbbbebeeebeeeeeebbbeeeeeeebbbeebbeebbeeeeebebbbbebbebebbbbbbbb:
Contact : b b b b b
queryA 5024:IMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECL:5123
:****************************************************************************************************:
7l1f_A_1 601:IMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECL: 700
SecStr :HHHHHHTT TTT HHHHHHHHHHHHHHHTS BBSSSSEE SS SS TTHHHHHHHHHHHHHHHHHHHHHHTS TTT HHHHHHHHHHHHHH:
ExpBur :bbbbbbbbeebeeebeeeeebbbbbbbbbbbbebebbbeebbbebebbbbeebebbeebbbbbbbbbbbbbbbbbbbebbbeebeeeebeebbeebbebb:
Contact : bbbb b
queryA 5124:YRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPY:5223
:****************************************************************************************************:
7l1f_A_1 701:YRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPY: 800
SecStr :HT S HHHHHHHHHHHHHHEEEEEETTEEEEEEETTTTTTTSS HHHHHHHHHHTS TTT B SSS S SSS EE EEETTEEE EE:
ExpBur :beeeeeeeebbeebeebbeeebbbbbeeebbbbbbbeeeeeeebbbeeebbbbbbbbbbbbbbeeeebbebeeeeebbeebeebbbbebeeeeeebbbbb:
queryA 5224:PDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHT:5321
:**************************************************************** *******************:
7l1f_A_1 801:PDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELXXXXXXXXXXXXXXXNTSRYWEPEFYEAMYTPHT: 898
SecStr : HHHHHHHHHEES SGGGSHHHHHHHHHHHHHHT TTTT SSHHHHHHHHHHHHHHHHHHHH --------------- S TTSHHHHHHHT S :
ExpBur :beebebbbbbbbbeeeeeeebeebeeebeebbbebbbbeeeeeeeeeebbebbbebbeebeeee---------------eeeeeeeeeebeebbeeee:
Contact : b
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[assembly_id:1]
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