Protein Model on 5nfy_A_1_E_1
(TEMPLATE: 
5nfy
)Protein Model on 5nfy_A_1_E_1
(TEMPLATE: 5nfy
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(queryA) | A 1 (A) | polymer(polypeptide(L)) [512 aa] | Polyprotein 1ab :Q1T6X8_CVHSA | |
| 2 | b | E 1 (M) | polymer(polypeptide(L)) [132 aa] | Polyprotein 1ab :Q1T6X8_CVHSA | 5929V 5930T 5932L 5933F 5934K 5935D 5944H 5945P 5946T 5947Q 5948A 5949P 5950T 5951H 5952L 5954V 5960T 5963L 5964C 5965V 5966D 5972K 5976Y 5980I 5984G 5985F 5986K 5987M 5988N 5989Y 5990Q 5991V 5992N 5994Y 6049Y 6051D 6052T 6053P(E) 6054N 6055N 6056T 6117L 6120M 6121K 6124V 6125K 6126I 6142F 6149Y 6162Y (identity: 98.0 %/92.7 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5nfy_A_1 identity=92.7% |
queryA 5928:NVTGLFKDCSKVITGLHPTQAPTHLSVDTKFKTEGLCVDIPGIPKDMTYRRLISMMGFKMNYQVNGYPNMFITREEAIRHVRAWIGFDVEGCHATREAVG:6027
:*********** **************** ******************************************************************* ***:
5nfy_A_1 10:NVTGLFKDCSKIITGLHPTQAPTHLSVDIKFKTEGLCVDIPGIPKDMTYRRLISMMGFKMNYQVNGYPNMFITREEAIRHVRAWIGFDVEGCHATRDAVG: 109
SecStr : STT B B S TTTT SSGGGS GGGEETTEE TTS S EEEE TT SB HHHHHHT SSEEEEEEEEEEE SSB S:
ExpBur :eeeeeeeebbeeeebbbeebbeeeeebbeebeeeeeeeeeeeeeeeeebebbbbbeeeeeeeeeeeeeebebeeeebbeebbbbbbbbbbbbebbeebee:
Contact : bb bbbb bbbbbbbbb b b bbbb b b b bbbbbbbbb b
queryA 6028:TNLPLQLGFSTGVNLVAVPTGYVDTPNNTDFSRVSAKPPPGDQFKHLIPLMYKGLPWNVVRIKIVQMLSDTLKNLSDRVVFVLWAHGFELTSMKYFVKIG:6127
:************************* *** * ** ************************************** **************************:
5nfy_A_1 110:TNLPLQLGFSTGVNLVAVPTGYVDTENNTEFTRVNAKPPPGDQFKHLIPLMYKGLPWNVVRIKIVQMLSDTLKGLSDRVVFVLWAHGFELTSMKYFVKIG: 209
SecStr : EEEEEEEESSS EEEB EEEEEESSSEEEEE EE SSSTTGGGSGGGSS B HHHHHHHHHHHHHHHHTTT SS EEEESSHHHHHHHHTTTB :
ExpBur :bebbbbbbbebeeebbbbbbbbbebeeeeeeeebebeebeeeeeeebeebbeeeeebeebbeebbebbbeebeebeebbbbbbbeeebbbbbbebbbeeb:
Contact : b bbbbbb b bb bbb
queryA 6128:PERTCCLCDRRATCFSTASDTYACWHHSIGFDYVYNPFMIDVQQWGFTGNLQSNHDLYCQVHGNAHVASCDAIMTRCLAVHECFVKRVDWTIEYPIIGDE:6227
:********* ******* ******* ** *************************** ******************************** ********:
5nfy_A_1 210:PERTCCLCDKRATCFSTSSDTYACWNHSVGFDYVYNPFMIDVQQWGFTGNLQSNHDQHCQVHGNAHVASCDAIMTRCLAVHECFVKRVDWSVEYPIIGDE: 309
SecStr :S B SSS SB EEETTTTEEE TTT SS EE S EEEESGGGT SS HHHHHHTT SSS SSHHHHHHHHHHHHHHTTTTS TT SS :
ExpBur :eeeebeebeebbbbbbeeeeebbbbeebeebbbbbbbbbbbbeeeeeeeebeebbeeebeeeeeeeebbbebebbbbbbbbbbbeeebeeebebeeeeeb:
Contact : b b b
queryA 6228:LKINAACRKVQHMVVKAALLADKFPVLHDIGNPKAIKCVPQADVEWKFYDAQPCSDKAYKIEELFYSYATHSDKFTDGVCLFWNCNVDRYPANSIVCRFD:6327
:* * *********** ************************* ************************** * ********************* ******:
5nfy_A_1 310:LRVNSACRKVQHMVVKSALLADKFPVLHDIGNPKAIKCVPQAEVEWKFYDAQPCSDKAYKIEELFYSYAIHHDKFTDGVCLFWNCNVDRYPANAIVCRFD: 409
SecStr :HHHHHHHHHHHHHHHHHHHHHS SEEEEET SS SSTT SEEEEEESS STT TTEEE HHHHTTT SSEEEEES SS SSEEEEEE :
ExpBur :eebbebbeebbebbbebbbebeebebbbbbebbebeebbeeeebebebbbeebeeeeeeebeebebbeeebeeebeebbbbbbebebeebbebbbbbbbb:
queryA 6328:TRVLSNLNLPGCDGGSLYVNKHAFHTPAFDKSAFVNLKQLPFFYYSDSPCESHGKQVVSDIDYVPLKSATCITRCNLGGAVCRHHANEYRLYLDAYNMMI:6427
:********************************** **************** **************************** *********:
5nfy_A_1 410:TRVLSNLNLPGCDGGSLYVNKHAFHTPAFDKSAFTNLKQLPFFYYSDSPCEXXXXXXXXXXXYVPLKSATCITRCNLGGAVCRHHANEYRQYLDAYNMMI: 509
SecStr :TT SSSEEE STT EEEESSSEEEE GGGGTT EE EEE S ----------- SSEEESS SSS HHHHHHHHHHHHHHHHHH:
ExpBur :beeeeebbbebbeebbbbbbebbebbeebeeebbeebeebebbbbbeeeee-----------eeeeeeeebbbebbeeeeebeebbeebeebeebbeebe:
queryA 6428:SAGFSLWVYKQFDTYNLWNTFTR:6450
:******* ***************:
5nfy_A_1 510:SAGFSLWIYKQFDTYNLWNTFTR: 532
SecStr :HTTEEEEE TT THHHHTTT :
ExpBur :eebbbbbbbeebeeeebbeebee:
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[assembly_id:1]
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