Protein Model on 6naj_A_1_C_1 (TEMPLATE: 6naj )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(ITAL_HUMAN) A 1 (A) polymer(polypeptide(L)) [920 aa] Integrin alpha-V :ITAV_HUMAN
2 b C 1 (C) polymer(polypeptide(L)) [90 aa] Fibronectin, HR10 variant :FINC_HUMAN 372D(Y) 374A(Q) 398E(T) 399V(A) 401A (identity: 20.0 %/29.2 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6naj_A_1 identity=29.2%
queryA       340:QDLTSFNMELSSSGISADLSRGHAVV-GAVGAKDWAGGFL-----DLKADLQDDTF---IGNEPLTPEVRA----GYLGYTVTWLP-SRQKTSLLASGAP: 425
                :**           * * *      *  *  *   * *                        *   *    *     **** *              ** *:
6naj_A_1     145:QDIDADGQGFCQGGFSIDFTKADRVLLGGPGSFYWQGQLISDQVAEIVSKYDPNVYSIKYNNQLATRTAQAIFDDSYLGYSVAVGDFNGDGIDDFVSGVP: 244
SecStr          :S  STTTTTT  TTSEEEE SSSEEEEEETTHHHHTBEEEEEEHHHHHHT  TT SS   TT EE     GGG S  BTSEEEEE  STT S EEEEEET:    
ExpBur          :eebebebbbebebbebbbbbeeebbbbbbbbbbeebbbbbbbebebbeeeeeeeeeeeebeeebebeeeeeeeeebebbbbbbbbebeeeeebbbbbbbb:    
Contact         :                                 b b                               bb b  b                          

queryA       426:RY-QHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGE------QRGGRVFIYQRRQLGFEEVSELQGDPGYPL: 518
                :*     * *        *   *      * *   ***      *   *       ******         *  * *     *  *      * *      :
6naj_A_1     245:RAARTLGMVYIYD----GKNMSSLYNFTGEQMAAYFGFSVAATDINGDDYADVF-IGAPLFMDRGSDGKLQEVGQVSVSLQRASGDFQTTKLNGFEVF--: 337
SecStr          :THHHHT EEEEE ----TTT  EEEEEE SSTTS TTSEEEEE SSSSSS EEE-EEETT EEE SS  EEE  EEEEEE  SSSS EEEEEE SSTT--:    
ExpBur          :ebeeeebbbbbbb----beebeeeeebebebeebebbbbbbbbbbbeeeebbbb-bbbbebebeeeeeeeebbbbbbbbbbeeebebeeeebebeeee--:    

queryA       519:GRFGEAITALTDINGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGIQW--------FGRSIHGVKDLEGDGLADVAVGA--ES: 605
                : *** **  * *   **  * *  **       * *******  **   ***  **       **        ** *  *  *    *  *  ***    :
6naj_A_1     338:ARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEG-------QWAARSMPPSFGYSMKGATDIDKNGYPDLIVGAFGVD: 430
SecStr          :  TTSEEEE TTSS SSS  EEEEETT SGGG  EEEEE EETTEE SS SEEEE ------- S  SSS   TTSEEEEEE SSSSSS EEEEE SSSS:    
ExpBur          :bebbbbbbebebbbeeeeebbbbbbbbbbeeeebbbbbbbbeeebbbeeeebebeb-------eeeeeeeebbbbebbebebebbebebbbbbbbbbbbb:    

queryA       606:QMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQI--KSLIPQFQGRLVANLTYTLQLDGHRTR---RRGLFPGGR---HELRR: 697
                :  *    ***          *         **           *   *     *   *        *    * **        ** **   *   *    :
6naj_A_1     431:RAILYRARPVITVNAGLEVYPSILNQDNKTCSLPGTALKVSCFNVRFCLKADGKGVLPR-----KLNFQVELLLDKLKQKGAIRRALFLYSRSPSHSKNM: 525
SecStr          :EEEEE B  EEEEEEEEEEE SEE TT   EE SSS  EE B EEEEEEEEEESSS  S-----EEEEEEEEESSSSS SSS   EE TTT SSEEEEEE:    
ExpBur          :ebbbbbbbbbbebebebebeeeebebeeeebebeeeeeebbebebebbbebebeeebee-----ebbbebebebbeeeeeeeeebbbbbeeeeeeeeeeb:    

queryA       698:NIAVTTSMSCTDFSFHF--PVCVQDLISPINVSLNFSLWEEEGTPRDQR--AQGKDIPPILR---PSLHSETWEIPFEKNCGEDKKCEANLRVSFSPARS: 790
                : *     * *              *   **       *        * *  *      ***    *   *    *     ****  *   * **      :
6naj_A_1     526:TISRGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRL--------DYRTAADTTGLQPILNQFTPANISRQAHILLD--CGEDNVCKPKLEVSVD-SDQ: 614
SecStr          :EEESSS  EEEE   EE  SSSS   SS EEEEEEEEE-------- TT   TTTS   EE SS  SEEEEEEEE  S-- TTTTS    EEEEEE- S :    
ExpBur          :ebeeeeeeeeeebebbbeeeeebeeeeebbbbbbebee--------eeebeeebeebebeeeeeeeeeeeeebbbeee--beeeeebebebebebe-eee:    

queryA       791:RALRLTAFASLSVELSLSNLEEDAYWVQLDLHFPPGLSFRKVEMLKPHSQIPVSCEELPEESRLLSRALSCNVSSPIFKAGHSVALQMMFNTLVNSSWGD: 890
                :          *       *  * **   *    *    *  *           **    *      *   *    *  ***        *     *    :
6naj_A_1     615:KKIYIGDDNPLTLIVKAQNQGEGAYEAELIVSIPLQADFIGV-VRNNEALARLSCAFKTENQ---TRQVVCDLGNPM-KAGTQLLAGLRFSVHQQSEMDT: 709
SecStr          : EEETTS  EEEEEEEEEE SS BTT EEEEE  TT  EEEE-  S SSS   EEEEE  SS---  EEEEE  SSB- SEEEEEEEEEEE    TTT S:    
ExpBur          :eebebeeebebbbebebbbeeebbbebebbbebbebbebeeb-beeeeebeebeeeeeeeee---eeebebebeebb-eeeeeeebbbebebeeeeeeee:    

queryA       891:SVELHANVTCNN: 902
                :**         *:
6naj_A_1     710:SVKFDLQIQSSN: 721
SecStr          :EEEEEEEEE S :    
ExpBur          :ebebebebebeb:    


Input Residue Numbers for Focused Sites

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