Protein Model on 5e6s_E_2_C_3 (TEMPLATE: 5e6s )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:4]

Window size :
[small] [medium] [large]

[help]

MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(ITAL_HUMAN) E 2 (E) polymer(polypeptide(L)) [580 aa] Integrin alpha-L :ITAL_HUMAN
2 b C 3 (C) polymer(polypeptide(L)) [578 aa] Integrin alpha-L :ITAL_HUMAN 200T 202Y 230L 232N 234F 235G 238N 242T 243E 246R 248E 268T 269D 270S 271G 272N 274D 277K 278D (identity: 100.0 %/98.1 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:5e6s_E_2 identity=98.1%
queryA        26:YNLDVRGARSFSPPRAGRHFGYRVLQVGNGVIVGAPGEGNSTGSLYQCQSGTGHCLPVTLRGSNYTSKYLGMTLATDPTDGSILACDPGLSRTCDQNTYL: 125
                :****************************************************************************************************:
5e6s_E_2       1:YNLDVRGARSFSPPRAGRHFGYRVLQVGNGVIVGAPGEGNSTGSLYQCQSGTGHCLPVTLRGSNYTSKYLGMTLATDPTDGSILACDPGLSRTCDQNTYL: 100
SecStr          :  B GGG EEE  TT  TTTTSEEEEETTEEEEEE   TT   EEEEEETTT  EEE   TT S   TTTTSEEEE TTT  EEEEEEEEEEEETTEEEE:    
ExpBur          :ebbebeeeeebebeeeeeebbeebbbeeebbbbbbbbeeeeebebbbbebeeeebeeeebeeeeeebeebbbbbbbbeeeebbbbbbbbbebebeeeebb:    

queryA       126:SGLCYLFRQNLQGPMLQGRPGFQECIKGNVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKLSNTSYQFAAVQFSTSYKTEFDFSDYVKRKDPDALLKHVK: 225
                :**************************************************************************************** ***********:
5e6s_E_2     101:SGLCYLFRQNLQGPMLQGRPGFQECIKGNVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKLSNTSYQFAAVQFSTSYKTEFDFSDYVKWKDPDALLKHVK: 200
SecStr          :EEEEEEESS TTS EEEE TT      SSEEEEEEEE BTT  HHHHHHHHHHHHHHHHHHTTSSEEEEEEEESSSEEEEE HHHHHHH  HHHHSTT  :    
ExpBur          :bbbbbbbeeebebebeebebbbbeebeeebbbbbbbbbbeebeeebbebbbebbbebbeebeeeebbbbbbbbbeeeebbbbbeebeeeeebeebbeebe:    
Contact         :                                                                          b b                       

queryA       226:HMLLLTNTFGAINYVATEVFREELGARPDATKVLIIITDGEATDSGNIDAAKDIIRYIIGIGKHFQTKESQETLHKFASKPASEFVKILDTFEKLKDLFT: 325
                :****************************************************************************************************:
5e6s_E_2     201:HMLLLTNTFGAINYVATEVFREELGARPDATKVLIIITDGEATDSGNIDAAKDIIRYIIGIGKHFQTKESQETLHKFASKPASEFVKILDTFEKLKDLFT: 300
SecStr          :   B   HHHHHHHHHHHTS GGGT  TTSEEEEEEEESS  SS S  GGGTTSEEEEEEESGGG SHHHHHTTTTTS S HHHHEEEESSTTHHHHTTT:    
ExpBur          :eeeeebbbbbbbeebbeebbeeeeebeeebbebbbbbbbbeeeeeeebeebeebbbbbbbbbeebeeeebeeebeebbbebbebbbbebeebeebeebbe:    
Contact         :    b b bb  b   bb  b b                   bbbbb b  bb                                               

queryA       326:ELQKKIYVIEGTSKQDLTSFNMELSSSGISADLSRGHAVVGAVGAKDWAGGFLDLKADLQDDTFIGNEPLTPEVRAGYLGYTVTWLPSRQKTSLLASGAP: 425
                :******          ************************************************************************************:
5e6s_E_2     301:ELQKKIXXXXXXXXXXLTSFNMELSSSGISADLSRGHAVVGAVGAKDWAGGFLDLKADLQDDTFIGNEPLTPEVRAGYLGYTVTWLPSRQKTSLLASGAP: 400
SecStr          :TTTT  ----------  S SSTT  EEEEEEEETTEEEEEETTHHHHTB EEEE TTSS EEEE  SS  STTTT  BTSEEEEE BSSS  EEEEEET:    
ExpBur          :ebbeeb----------eeebebbbbbbbebbebbeeebbbbbbbbebebbbbbebeeebeebeebebeeeeeebeebebbebbbbbebeeeebbbbbbbb:    

queryA       426:RYQHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGEQRGGRVFIYQRRQLGFEEVSELQGDPGYPLGRFGEAI: 525
                :****************************************************************************************************:
5e6s_E_2     401:RYQHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGEQRGGRVFIYQRRQLGFEEVSELQGDPGYPLGRFGEAI: 500
SecStr          :TGGGT EEEEEE   TT   EEEEEEE  STTS TTSEEEEE TT SSB  EEEEEETT   TTB  EEEEEEE SSSEEEEEEE   SSBTTS TTSEE:    
ExpBur          :ebeeebbbbbbebeeeeeebebeeebebeeeebbbbbebbebbbeeebbbbbbbbbbbebeeeebbbbbbbbebeeebbeeeeebebeeebeebebbebb:    

queryA       526:TALTDINGDGLVDVAVGAPLEEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGIQWFGRSIHGVKDLEGDGLADVAVGAESQMIVLSSRPV: 615
                :******************************************************************************************:
5e6s_E_2     501:TALTDINGDGLVDVAVGAPLEEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGIQWFGRSIHGVKDLEGDGLADVAVGAESQMIVLSSRPV: 590
SecStr          :EE   SSSSSS  EEEEETTSTT EEEEE EETTEE SS SEEEEHHHH TT  STTSEEEEEE SSSSS  EEEEEETTEEEEEEB   :    
ExpBur          :bebeebbeeebbbbbbbbbebeebbbbbbbbeeebbeeeeebebebeebeeebeebbbbbbbeeebeeeeebbbbbbbbeebbbbbbeee:

Input Residue Numbers for Focused Sites

ex) 2,15,123