Protein Model on 4z7n_C_1_M_1 (TEMPLATE: 4z7n )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(ITAL_HUMAN) C 1 (C) polymer(polypeptide(L)) [453 aa] Integrin alpha-IIb :ITA2B_HUMAN
2 b M 1 (M) branched(oligosaccharide) alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 452H(R) 456I(M) (identity: 0.0 %/38.0 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:4z7n_C_1 identity=38.0%
queryA       396:TPEVRAGYLGYTVTW--LPSRQKTSLLASGAPRYQH-MGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGEQRG-: 491
                : **   ** ** *          *     ***      * *                   * *  ****      **  **   **  **** * * *  :
4z7n_C_1     227:NPEYFDGYWGYSVAVGEFDGDLNTTEYVVGAPTWSWTLGAVEILDS-----YYQRLHRLRGEQMASYFGHSVAVTDVNGDGRHDLL-VGAPL-YMESRAD: 319
SecStr          : GGGTT  TTSEEEEE  SS SSS EEEEEETTHHHHT EEEEE T-----T    EEEE SSTTS TTSEEEEE SSSSSS EEE-EEETT- EEEETT:    
ExpBur          :eeebeebebbebbbebbbeeeeeeebbbbbbbbbbeeebbbbbbbb-----ebeeeeebebebeebbbbbbbbbbbbbebeeebbb-bbbbe-beeeeee:    
Contact         :                                                           b   b                                    

queryA       492:------GRVFIYQR----RQLGFEEVSELQGDPGYPLGRFGEAITALTDINGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGI: 578
                :      ***           **      * *   *  **** **  * *   **  * ** **       * *  * *   **   ***         * :
4z7n_C_1     320:RKLAEVGRVYLFLQPRGPHALGAPSLL-LTGTQLY--GRFGSAIAPLGDLDRDGYNDIAVAAPYGGPSGRGQVLVFLGQSEGLRSRPSQVLD-SPFPTGS: 415
SecStr          :TEEEE BEEEEE   STT    S SEE-EE  STT--  BTS EEEEE SS SSS EEEEEETT TTTSSBEEEEE EETTEE SS SEEEE-  S TT :    
ExpBur          :eeebbbbbbbbbebeeeeeebeeeeee-bbbeeee--bebbbbbbebbbbbeeeeebbbbbbbebbeebebbbbbbbbbeebbeeeeebebe-bebeeeb:    

queryA       579:QWFGRSIHGVKDLEGDGLADVAVGA--ESQMIVLSSRPV: 615
                :  ** *  *  *    *  *  ***    *  *    **:
4z7n_C_1     416:A-FGFSLRGAVDIDDNGYPDLIVGAYGANQVAVYRAQPV: 453
SecStr          : -BTSSEEEEE SS SSS EEEEEETTTTEEEEE B   :    
ExpBur          :b-bbebbebeebbeeeebbbbbbbbbebbebbbbbbeee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123