Protein Model on 4um8_C_1_M_1 (TEMPLATE: 4um8 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(ITAL_HUMAN) C 1 (C) polymer(polypeptide(L)) [588 aa] INTEGRIN ALPHA-V :ITAV_HUMAN
2 b M 1 (M) branched(oligosaccharide) alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 432R(M) 434L(Y) 447Q(S) 448V(L) 450T(N) (identity: 0.0 %/32.1 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:4um8_C_1 identity=32.1%
queryA       403:YLGYTVTWLP-SRQKTSLLASGAPRY-QHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGE------QRGGRV: 494
                :**** *              ** **     * *        *   *      * *   ***      *   *       ******         *  * *:
4um8_C_1     221:YLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYD----GKNMSSLYNFTGEQMAAYFGFSVAATDINGDDYADVF-IGAPLFMDRGSDGKLQEVGQV: 315
SecStr          : BTSSEEEE SSSSSS EEEEEETTHHHHT EEEEE ----TTT  EEEEEE SSTTS TTSEEEEE SSSSS  EEE-EEETT EEE TT  EEE  EE:    
ExpBur          :ebbbbbbbbebeeeeebbbbbbbbebeeeebbbbbbb----beebeeeeebebeeeebebbebbbbbbbbeeeebbbb-bbbbebeeeeeeeeeebbbbb:    
Contact         :                               b b            bb b                                                  

queryA       495:FIYQRRQLGFEEVSELQGDPGYPLGRFGEAITALTDINGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGIQW--------FGR: 583
                :     *  *      * *       *** **  * *   **  * *  **       * *******  **   ***  **       **        ** :
4um8_C_1     316:SVSLQRASGDFQTTKLNGFEVF--ARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEG-------QWAARSCPPSFGY: 406
SecStr          :EEEEE TTS EEEEEEE SSTT--S TTSEEEEEESSS SSS EEEEEETT SGGG  EEEEE B SSSB SS SEEEE -------    SSS   TTS:    
ExpBur          :bbbbbeeebebeeeebebeeee--bebbbbbbebbbbbeeeeebbbbbbbbbeeeebbbbbbbbbeeebbbeeeebebeb-------ebeeeeeebbbbe:    

queryA       584:SIHGVKDLEGDGLADVAVGA--ESQMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQI--KSLIPQFQGRLVANLTYTLQLDG: 679
                :*  *  *    *  *  ***      *    ***          *         **           *   *     *   *      *  *   *   *:
4um8_C_1     407:SMKGATDIDKNGYPDLIVGAFGVDRAILYRARPVITVNAGLEVYPSILNQDNKTCSLPGTALKVSCFNVRFCLKADGKGVLPRKLNFQVELLLDKLKXXG: 506
SecStr          :EEEEEE SS SSS EEEEEEGGGTEEEEE B  EEEE  EEEEE SEE TT   SB TTSS B  EEEEEEEE EEE SS  SEEEEEEEEEET   -- :    
ExpBur          :bbbbebebbebebbbbbbbbbbbbebbbbbbbbbbebeeebebeeeebebeeeeeebeeeeeebbbbebebbbebebeeebeeebebebebebbeee--e:    

queryA       680:HRTRRRGLFPGGR---HELRRNIAVTTSMSCTDFSFHF--PVCVQDLISPINVSLNFSL: 733
                :    ** **   *   *     *     * *              *   **       *:
4um8_C_1     507:--AIRRALFLYSRSPSHSKNMTISRGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRL: 563
SecStr          :--    EEESSS SSEEEEEEEEEBTS  EEEEEEEEE  GGG    SS EEEEEEEEE:    
ExpBur          :--eeebbbbbeeeebebeeebebeeeeeeeeeebebbbeeeeebeeeeeebbbbbebeb:    


Input Residue Numbers for Focused Sites

ex) 2,15,123