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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(ITAL_HUMAN) | C 1 (C) | polymer(polypeptide(L)) [588 aa] | INTEGRIN ALPHA-V :ITAV_HUMAN | |
2 | b | D 1 (D) | polymer(polypeptide(L)) [414 aa] | INTEGRIN BETA-6 :ITB6_HUMAN | 403Y 406Y 426R 428Q(R) 429H(T) 456I(M) 457G(A) 459Y 462G(F) 484L 486Y(M) 490R(E) 516Y(F) 520R 545L(Y) 583R(Y) (identity: 37.5 %/32.1 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:4um8_C_1 identity=32.1% |
queryA 403:YLGYTVTWLP-SRQKTSLLASGAPRY-QHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGE------QRGGRV: 494 :**** * ** ** * * * * * * *** * * ****** * * *: 4um8_C_1 221:YLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYD----GKNMSSLYNFTGEQMAAYFGFSVAATDINGDDYADVF-IGAPLFMDRGSDGKLQEVGQV: 315 SecStr : BTSSEEEE SSSSSS EEEEEETTHHHHT EEEEE ----TTT EEEEEE SSTTS TTSEEEEE SSSSS EEE-EEETT EEE TT EEE EE: ExpBur :ebbbbbbbbebeeeeebbbbbbbbebeeeebbbbbbb----beebeeeeebebeeeebebbebbbbbbbbeeeebbbb-bbbbebeeeeeeeeeebbbbb: Contact :b b b bb bb b b b b bb b b queryA 495:FIYQRRQLGFEEVSELQGDPGYPLGRFGEAITALTDINGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGIQW--------FGR: 583 : * * * * *** ** * * ** * * ** * ******* ** *** ** ** ** : 4um8_C_1 316:SVSLQRASGDFQTTKLNGFEVF--ARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEG-------QWAARSCPPSFGY: 406 SecStr :EEEEE TTS EEEEEEE SSTT--S TTSEEEEEESSS SSS EEEEEETT SGGG EEEEE B SSSB SS SEEEE ------- SSS TTS: ExpBur :bbbbbeeebebeeeebebeeee--bebbbbbbebbbbbeeeeebbbbbbbbbeeeebbbbbbbbbeeebbbeeeebebeb-------ebeeeeeebbbbe: Contact : b b b bb b queryA 584:SIHGVKDLEGDGLADVAVGA--ESQMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQI--KSLIPQFQGRLVANLTYTLQLDG: 679 :* * * * * *** * *** * ** * * * * * * * *: 4um8_C_1 407:SMKGATDIDKNGYPDLIVGAFGVDRAILYRARPVITVNAGLEVYPSILNQDNKTCSLPGTALKVSCFNVRFCLKADGKGVLPRKLNFQVELLLDKLKXXG: 506 SecStr :EEEEEE SS SSS EEEEEEGGGTEEEEE B EEEE EEEEE SEE TT SB TTSS B EEEEEEEE EEE SS SEEEEEEEEEET -- : ExpBur :bbbbebebbebebbbbbbbbbbbbebbbbbbbbbbebeeebebeeeebebeeeeeebeeeeeebbbbebebbbebebeeebeeebebebebebbeee--e: Contact : b queryA 680:HRTRRRGLFPGGR---HELRRNIAVTTSMSCTDFSFHF--PVCVQDLISPINVSLNFSL: 733 : ** ** * * * * * * ** *: 4um8_C_1 507:--AIRRALFLYSRSPSHSKNMTISRGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRL: 563 SecStr :-- EEESSS SSEEEEEEEEEBTS EEEEEEEEE GGG SS EEEEEEEEE: ExpBur :--eeebbbbbeeeebebeeebebeeeeeeeeeebebbbeeeeebeeeeeebbbbbebeb: |