Protein Model on 4o02_A_1_R_1 (TEMPLATE: 4o02 )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(ITAL_HUMAN) A 1 (A) polymer(polypeptide(L)) [915 aa] Integrin alpha-V :ITAV_HUMAN
2 b R 1 (A) non-polymer(NO3) NITRATE ION 390I(Y) 393E(Q) (identity: 0.0 %/29.2 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:4o02_A_1 identity=29.2%
queryA       340:QDLTSFNMELSSSGISADLSRGHAVV-GAVGAKDWAGGFL-----DLKADLQDDTF---IGNEPLTPEVRA----GYLGYTVTWLP-SRQKTSLLASGAP: 425
                :**           * * *      *  *  *   * *                        *   *    *     **** *              ** *:
4o02_A_1     145:QDIDADGQGFCQGGFSIDFTKADRVLLGGPGSFYWQGQLISDQVAEIVSKYDPNVYSIKYNNQLATRTAQAIFDDSYLGYSVAVGDFNGDGIDDFVSGVP: 244
SecStr          :SS STTTTSS  TTSEEEE SSS EEEEES HHHHTBEEEEE HHHHHHH  TT SS   TT EE     GGGTT  BTSEEEEE  SSSSS EEEEEET:    
ExpBur          :eeeeeebbbebebbebbbbbeeeebbbbbbbbbeebbbbbbbebebbeeeeeeeeebbebeeebebeeeeeeeeebebbebbbbbebeeeeeebbbbbbb:    
Contact         :                                                        bb b  b                                     

queryA       426:RY-QHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGE------QRGGRVFIYQRRQLGFEEVSELQGDPGYPL: 518
                :*     * *        *   *      * *   ***      *   *       ******         *  * *     *  *      * *      :
4o02_A_1     245:RAARTLGMVYIYD----GKNMSSLYNFTGEQMAAYFGFSVAATDINGDDYADVF-IGAPLFMDRGSDGKLQEVGQVSVSLQRASGDFQTTKLNGFEVF--: 337
SecStr          :THHHHT EEEEE ----SSSS EEEEEE SSTTS TTSEEEEE SS SSS EEE-EEETT EEEETTTEEEE  EEEEEE  TTS  EEEEEE SSTT--:    
ExpBur          :ebeeebbbbbbbb----beebeeeeebebeeeebebbbbbbebbbbeeeebbbb-bbbbebeeebeeeeeebbbbbbbbbbbeebebeeeebebeeee--:    

queryA       519:GRFGEAITALTDINGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGIQW--------FGRSIHGVKDLEGDGLADVAVGA--ES: 605
                : *** **  * *   **  * *  **       * *******  **   ***  **       **        ** *  *  *    *  *  ***    :
4o02_A_1     338:ARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEG-------QWAARSMPPSFGYSMKGATDIDKNGYPDLIVGAFGVD: 430
SecStr          :  TTSEEEEEE SS SSS EEEEEETT SGGG  EEEEE B SSSB SS SEEEE -------S   SSS   TTSEEE SS  SSSSS  EEEEEGGGT:    
ExpBur          :bebbbbbbebbbbbeeeeebbbbbbbbbbeebbbbbbbbbbbeebeeeeeeeebee-------eeeeeeeebbbbebbbbeeebbebebbbbbbbbbbbb:    

queryA       606:QMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQI--KSLIPQFQGRLVANLTYTLQLDGHRTR---RRGLFPGGR---HELRR: 697
                :  *    ***          *         **           *   *     *   *        *    * **        ** **   *   *    :
4o02_A_1     431:RAILYRARPVITVNAGLEVYPSILNQDNKTCSLPGTALKVSCFNVRFCLKADGKGVLPR-----KLNFQVELLLDKLKQKGAIRRALFLYSRSPSHSKNM: 525
SecStr          :EEEEEEE  EEEEEEEEEESSS   GGG  B  TTSS  B EEEEEEEEEEE SS   S----- EEEEEEEES SS  SSS   EEESSS  SEEEEEE:    
ExpBur          :ebbbbbbbbbbebeeeeeeeeeeeebeeeeeeeeeeeeeebeeeebebbbbeeeeeeee-----eebbbbeebbbeebeeeeeebeebeeeeeeeeebeb:    

queryA       698:NIAVTTSMSCTDFSFHF--PVCVQDLISPINVSLNFSLWEEEGTPRDQR--AQGKDIPPILR---PSLHSETWEIPFEKNCGEDKKCEANLRVSFSPARS: 790
                : *     * *              *   **       *        * *  *      ***    *   *    *     ****  *   * **      :
4o02_A_1     526:TISRGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRL--------DYRTAADTTGLQPILNQFTPANISRQAHILLD--CGEDNVCKPKLEVSVD-SDQ: 614
SecStr          :EE SS   EEEEEEEEE  STT    SS   EEEEEEE-------- SSS   SS    EE TTS SEEEE    S S--TTTTS     EEEEEE- S :    
ExpBur          :ebeeeeeeeeeeeeebeeeeeeeeeeeeeebeebebeb--------eeeeeeeeeebbbeeeeeeeeeeebeebbbee--beeebebebebeeeee-eee:    

queryA       791:RALRLTAFASLSVELSLSNLEEDAYWVQLDLHFPPGLSFRKVEMLKPHSQIPVSCEELPEESRLLSRALSCNVSSPIFKAGHSVALQMMFNTLVNSSWGD: 890
                :          *       *  * **   *    *    *  *           **    *      *   *    *  ***        *     *    :
4o02_A_1     615:KKIYIGDDNPLTLIVKAQNQGEGAYEAELIVSIPLQADFIGV-VRNNEALARLSCAFKTENQ---TRQVVCDLGNPM-KAGTQLLAGLRFSVHQQSEMDT: 709
SecStr          :    SSSSEEEEEEEEEEE SS  BT EEEEE  SS EEEEE-  SSTTS    EEE   SS---  EEEEE  SB - SS EEEEEEEEEE   SS  S:    
ExpBur          :beebeeeebeeeeeeeeebeebbbbebeeeeeeeeeeeeeee-eeeeeebeeeeeeeeeeee---ebbeeeeeebeb-eeeeeeeebebbeeeeeeeeee:    

queryA       891:SVELHANVTCNN: 902
                :**         *:
4o02_A_1     710:SVKFDLQIQSSN: 721
SecStr          :   EEEEEE   :    
ExpBur          :eeeeeebbebeb:

Input Residue Numbers for Focused Sites

ex) 2,15,123