Protein Model on 4cak_A_1_B_1 (TEMPLATE: 4cak )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(ITAL_HUMAN) A 1 (A) polymer(polypeptide(L)) [913 aa] Integrin alpha-IIb :ITA2B_HUMAN
2 b B 1 (B) polymer(polypeptide(L)) [680 aa] Integrin beta-3 :ITB3_HUMAN 401A(D) 403Y 406Y 425P 426R(T) 429H(W) 430M(L) 453G 454T(E) 455Q 456I(M) 457G(A) 458S 459Y 460F 462G(H) 481G 482A 483P 484L 486Y 487G(M) 488E 489Q(S) 490R 491G(A) 492G 493R 494V 495F(Y) 508S(L) 510L 511Q(T) 512G 513D(T) 514P(Q) 515G(L) 516Y 519G 520R 521F 523E(S) 543A 544P 545L(Y) 546E(S) 547E(G) 548Q(R) 550A(Q) 564Q(R) 575L(T) 576S(G) 577G(S) 578I(A) 583R(F) 628E(L) 629I(N) 630P 631V(A) 632H(V) 633E(K) 636C 637S(V) 638Y(L) 641S(T) 642N(K) 643K(T) 644M(P) 645K(V) 646E(S) 678D 679G(R) 680H(Q) 681R(K) 682T(P) 683R 684R 685R 686G(V) 687L 689P(L) 692R(Q) 718V(F) 719Q(R) 720D 721L(K) 722I(L) 723S 724P 725I 726N(V) 759H 761E(Q) 764E(Q) 767F(I) 768E(V) 769K(L) 770N(D) 771C 772G 773E 775K(D) 813D(G) 814A 833E(S) 834M(N) 835L(V) 836K(E) 837P(G) 838H(F) 839S(E) 840Q(R) 865S(N) 866P 867I(M) 869K 870A(K) 871G(N) 872H(A) 873S(Q) (identity: 36.7 %/30.9 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:4cak_A_1 identity=30.9%
queryA       396:TPEVRAGYLGYTVTW--LPSRQKTSLLASGAPRYQH-MGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGEQRG-: 491
                : **   ** ** *          *     ***      * *                   * *  ****      **  **   **  **** * * *  :
4cak_A_1     227:NPEYFDGYWGYSVAVGEFDGDLNTTEYVVGAPTWSWTLGAVEILDS-----YYQRLHRLRGEQMASYFGHSVAVTDVNGDGRHDLL-VGAPL-YMESRAD: 319
SecStr          : GGGTT  TTSEEEEE  SS SSS EEEEEETTTTTTT EEEEE T-----TS EEEEEE SSTTS TTSEEEEE SSSSSSBEEE-EEETT- EE  SS:    
ExpBur          :eebbeebebbebbbebbbeeeeeebbbbbbbbbbbeeebbbbbbbe-----ebeeebbbebeeeebbbbebbbbbbbbbbbbebbb-bbbbe-bbeeeee:    
Contact         :     b b  b                    bb  bbb                      bbbbbbbb b                  bbbb bbbbbbb

queryA       492:------GRVFIYQR----RQLGFEEVSELQGDPGYPLGRFGEAITALTDINGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGI: 578
                :      ***           **      * *   *  **** **  * *   **  * ** **       * *  * *   **   ***           :
4cak_A_1     320:RKLAEVGRVYLFLQPRGPHALGAPSLL-LTGTQLY--GRFGSAIAPLGDLDRDGYNDIAVAAPYGGPSGRGQVLVFLGQSEGLRSRPSQVLDSPFPTGSA: 416
SecStr          : TTEE  EEEEE   SSSSEE S SEE-EE  STT--S TTSSEEEEESSSSSSS EEEEEETT SSSSS EEEEE EETTEE SS SEEEE SS TTS :    
ExpBur          :eeebebbbbbbbbbbbbbbbbbbbbbb-bbbeeee--bebbbbbbebbbbbbbebebbbbbbbebbeebebbbbbbbbbbbbbbbeeeeebebebeeebb:    
Contact         :bbbbbbbbbb                b bbbbbbb  bbb b                   bbbbbbbbb b             b          bbbb

queryA       579:QWFGRSIHGVKDLEGDGLADVAVGA--ESQMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQIKSL-IPQFQGRLVANLTYTL: 675
                :  ** *  *  *    *  *  ***    *  *    ***             *     *            **  *       ***        *   *:
4cak_A_1     417:--FGFSLRGAVDIDDNGYPDLIVGAYGANQVAVYRAQPVVKASVQLLVQDSLNPAVK-SCVLPQTKTPVSCFNIQMCVGATGHNIPQ-----KLSLNAEL: 508
SecStr          :--EEEEEEEEE SSBSSS EEEEEETTTTEEEEE     EEEEEEEEE S B TT  - EE SSS  EEEEEEEEEEEEEE TT  S-----S EEEEEE:    
ExpBur          :--bbebbebeebbbebbbbbbbbbbeebeebbbbbbbbebebebebebeeebeeeee-ebebeeeeeebbbbebebbbbbeeeeeee-----ebebebeb:    
Contact         :    b                    b                         bbbbbb  bbb  bbbbbb                              

queryA       676:QLDGHRTR--RRGLFPGGRHELRRNIAVTTSMSCTDFSFHFPVC------------VQDLISPINVSLNFSLWEEEGTPRDQRAQGKDIPPILRPSLHSE: 761
                :***    *  ** *  *            *         * * *              *  ***  *** **   *         *      *    *  :
4cak_A_1     509:QLDRQKPRQGRRVLLLGSQQ-------AGTTLNLDLGGKHSPICHTTMAFLRDEADFRDKLSPIVLSLNVSLPPTEA--------GMAPAVVLHGDTHVQ: 593
SecStr          :EETTTS GGG SEEETTT S-------SEEEEEEE TT SS EEEEEEEEE  GGG    SS EEEEEEEE     T--------T   B  EEE  EEE:    
ExpBur          :bbbeeeeeeebbbbbbeeee-------beeeeebebbeeeeebeeeeebbbeeeeebeeeeebbbbbbebbbeebee--------eeebbbbbbbbbbbb:    
Contact         :  bbbbbbbbbbbb b  b                              bbbbbbbbbbbbbbbb                                b b

queryA       762:TWEIPFEKNCGEDKKCEANLRVSFSPARSRALRLTAFASLSVELSLSNLEEDAYWVQLDLHFPPGLSF-RKVEMLKPHSQIPVSCEELPEESRLLSRALS: 860
                :         ****  *   *    *   *  *   *   *       *  * **   *  * * *    *              *    *      *   :
4cak_A_1     594:E-QTRIVLDCGEDDVCVPQLQLTASVTGS-PLLVGADNVLELQMDAANEGEGAYEAELAVHLPQGAHYMRALSNVEGFERL--ICNQKKENE---TRVVL: 686
SecStr          :E-EE B    TTTT     EEEEEEEES -SEETTS   EEEEEEEEE SS BTTEEEEEE  TTEEEEEEEE  --  BB-- EEEE SSS---S EEE:    
ExpBur          :b-bbbbeeebbbbbbbbbebebeeeeeee-ebeeeeebebebebebbbebbbbbbbbbbbbbbebbbbbebebee--eebb--bbbbbbeee---ebbbb:    
Contact         :  b  bbbbbbb b                                     bb                   bbbbbbbb                    

queryA       861:CNVSSPIFKAGHSVALQMMFNTLVNSSWGDSVELHANVTCNNEDS: 905
                :*    *  *        *          * **         *   :
4cak_A_1     687:CELGNPM-KKNAQIGIAMLVSVGNLEEAGESVSFQLQIRSKNSQN: 730
SecStr          :EEEETTB- TTEEEEEEEEEEE   TT  SEEEEEEEEE   SSS:    
ExpBur          :bbbbbbb-eeeeebbbebbbbbeeeeeeeebbbbebbbbbbbbbe:    
Contact         :    bbb bbbbb                                                                                       


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