Protein Model on 1jv2_A_1_E_1 (TEMPLATE: 1jv2 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(ITAL_HUMAN) A 1 (A) polymer(polypeptide(L)) [927 aa] INTEGRIN, ALPHA V
2 b E 1 (E) branched(oligosaccharide) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 728S(F) 730N(E) 757S(A) 758L(N) (identity: 0.0 %/29.2 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:1jv2_A_1 identity=29.2%
queryA       340:QDLTSFNMELSSSGISADLSRGHAVV-GAVGAKDWAGGFL-----DLKADLQDDTF---IGNEPLTPEVRA----GYLGYTVTWLP-SRQKTSLLASGAP: 425
                :**           * * *      *  *  *   * *                        *   *    *     **** *              ** *:
1jv2_A_1     145:QDIDADGQGFCQGGFSIDFTKADRVLLGGPGSFYWQGQLISDQVAEIVSKYDPNVYSIKYNNQLATRTAQAIFDDSYLGYSVAVGDFNGDGIDDFVSGVP: 244
SecStr          :S  STTTTTT  TTSEEE  TTS  EEEETTHHHHTBEEEEE HHHHSTT  TT S    TTEEE     GGG S  BTSEEEEE  SSSSS EEEEEET:    
ExpBur          :eebeeebbbebbbbebbbbbeeebbbbbbbbbbeebbbbbbbebebbeeeeeeeeeebebeeebebeeeeeeeeebebbebbbbbebeeeeebbbbbbbb:    

queryA       426:RY-QHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGE------QRGGRVFIYQRRQLGFEEVSELQGDPGYPL: 518
                :*     * *        *   *      * *   ***      *   *       ******         *  * *     *  *      * *      :
1jv2_A_1     245:RAARTLGMVYIYD----GKNMSSLYNFTGEQMAAYFGFSVAATDINGDDYADVF-IGAPLFMDRGSDGKLQEVGQVSVSLQRASGDFQTTKLNGFEVF--: 337
SecStr          :THHHHT EEEEEE----TTT  EEEEEE SSTTS TTSEEEEE TTSSS  EEE-EEETT EEE TTS EEE  EEEEEEE TTS EEEE  B SSSS--:    
ExpBur          :ebeeebbbbbbbb----beebeeeeebebeeeebebbbbbbbbbbbeeeebbbb-bbbbebeeebeeeeeeebbbbbbbbbeeebeeeeeebebeeee--:    

queryA       519:GRFGEAITALTDINGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGIQW--------FGRSIHGVKDLEGDGLADVAVGA--ES: 605
                : *** **  * *   **  * *  **       * *******  **   ***  **       **        ** *  *  *    *  *  ***    :
1jv2_A_1     338:ARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEG-------QWAARSMPPSFGYSMKGATDIDKNGYPDLIVGAFGVD: 430
SecStr          :S SBT  B  S SS SSS   BEEETT SGGG  EEE   EETTEE  S S EEE -------    SSS   TTSEEE  S  SSSSS EEEEEETTTT:    
ExpBur          :bebbbbbbebbbbbeeeeebbbbbbbbbeeeeebbbbbbbbeeebbeeeebbebeb-------eeeeeeeebbbbebbbbeeebbebebbbbbbbbbbbb:    

queryA       606:QMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQI--KSLIPQFQGRLVANLTYTLQLDGHRTR---RRGLFPGGR---HELRR: 697
                :  *    ***          *         **           *   *     *   *        *    * **        ** **   *   *    :
1jv2_A_1     431:RAILYRARPVITVNAGLEVYPSILNQDNKTCSLPGTALKVSCFNVRFCLKADGKGVLPR-----KLNFQVELLLDKLKQKGAIRRALFLYSRSPSHSKNM: 525
SecStr          :EEEEEEB  EEEEE  EEESS EE TT   B  SSS   B EEEEEEEEEEE SSS  S----- B  EEEEEE TT  TT     EESSS SSEEEEE :    
ExpBur          :bbbbbbbbbbbebeeebebeeeebebeeeeeeeeeeeeebbbbbbebbbebebeeebee-----ebebebebbbbeebeeeeeebbbbbeeeebeeeeeb:    

queryA       698:NIAVTTSMSCTDFSFHF--PVCVQDLISPINVSLNFSLWEEEGTPRDQR--AQGKDIPPILR---PSLHSETWEIPFEKNCGEDKKCEANLRVSFSPARS: 790
                : *     * *              *   **       *        * *  *      ***    *   *    *     ****  *   * **      :
1jv2_A_1     526:TISRGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRL--------DYRTAADTTGLQPILNQFTPANISRQAHILLD--CGEDNVCKPKLEVSVD-SDQ: 614
SecStr          : B STT  EEEEEEEE   GGG   SS  EEEEEEEE -------- SS S SSS    EE TT  SEE  EEEE  S--  SSSS    EEEEE - TT:    
ExpBur          :ebbeeeeeeeeebbbbbeeeeebebebebbbbbbebeb--------eeebeeeeeebebbeeeeeeeeeeeebbbeee--beeeeebebebbbebe-eee:    
Contact         :                                b b                               bb                                

queryA       791:RALRLTAFASLSVELSLSNLEEDAYWVQLDLHFPPGLSFRKVEMLKPHSQIPVSCEELPEESRLLSRALSCNVSSPIFKAGHSVALQMMFNTLVNSSWGD: 890
                :          *       *  * **   *    *    *  *           **    *      *   *    *  ***        *     *    :
1jv2_A_1     615:KKIYIGDDNPLTLIVKAQNQGEGAYEAELIVSIPLQADFIGV-VRNNEALARLSCAFKTENQ---TRQVVCDLGNPM-KAGTQLLAGLRFSVHQQSEMDT: 709
SecStr          :  EESSS EEEEEEEEEEE SS BSS EEEEE  TT  EEEE-  SSTTSB    EEEESSS--- EEEEEE  SSB- SS B  EEEEEEE   SSSSS:    
ExpBur          :eebebbeebebebebebbbeeebbbebebbbebbebbeeebb-beeeeeebebebeeeeeee---eebbbbebeeeb-eeeeeeebbbebbbeeebeeee:    

queryA       891:SVELHANVTCNN: 902
                :**         *:
1jv2_A_1     710:SVKFDLQIQSSN: 721
SecStr          :EEEEEEEEE S :    
ExpBur          :ebebebebebeb:    


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