Protein Model on 6mk0_A_1_E_1 (TEMPLATE: 6mk0 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(ITAL_HUMAN) A 1 (A) polymer(polypeptide(L)) [920 aa] Integrin alpha-V :ITAV_HUMAN
2 b E 1 (E) branched(oligosaccharide) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 625S(Y) 626P 633E(N) 647G(C) (identity: 25.0 %/29.2 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6mk0_A_1 identity=29.2%
queryA       340:QDLTSFNMELSSSGISADLSRGHAVV-GAVGAKDWAGGFL-----DLKADLQDDTF---IGNEPLTPEVRA----GYLGYTVTWLP-SRQKTSLLASGAP: 425
                :**           * * *      *  *  *   * *                        *   *    *     **** *              ** *:
6mk0_A_1     145:QDIDADGQGFCQGGFSIDFTKADRVLLGGPGSFYWQGQLISDQVAEIVSKYDPNVYSIKYNNQLATRTAQAIFDDSYLGYSVAVGDFNGDGIDDFVSGVP: 244
SecStr          :S  STTTTTT  TTSEEEE SSSEEEEEETTHHHHTBEEEEEEHHHHHHT  TT SS   TT EE     GGGTT  BTSEEEEE  STT S EEEEEET:    
ExpBur          :eebebebbbebbbbebbbbbeeebbbbbbbbbbeebbbbbbbebebbeeeeeeeeeeeebeeebebeeeeeeeeebebbebbbbbebeeeeebbbbbbbb:    

queryA       426:RY-QHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGE------QRGGRVFIYQRRQLGFEEVSELQGDPGYPL: 518
                :*     * *        *   *      * *   ***      *   *       ******         *  * *     *  *      * *      :
6mk0_A_1     245:RAARTLGMVYIYD----GKNMSSLYNFTGEQMAAYFGFSVAATDINGDDYADVF-IGAPLFMDRGSDGKLQEVGQVSVSLQRASGDFQTTKLNGFEVF--: 337
SecStr          :THHHHT EEEEE ----TTT  EEEEEE SSTTS TTSEEEEE TTSSSS EEE-EEETT EEE SSS EEE  EEEEEEEETTEEEEEEEEE SSTT--:    
ExpBur          :ebeeeebbbbbbb----beebeeeeebebebeebebbbbbbbbbbbeeeebbbb-bbbbebebeeeeeeeebbbbbbbbbbeeebebeeeebebeeee--:    

queryA       519:GRFGEAITALTDINGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGIQW--------FGRSIHGVKDLEGDGLADVAVGA--ES: 605
                : *** **  * *   **  * *  **       * *******  **   ***  **       **        ** *  *  *    *  *  ***    :
6mk0_A_1     338:ARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEG-------QWAARSMPPSFGYSMKGATDIDKNGYPDLIVGAFGVD: 430
SecStr          :S GGGEEEE S SS SSS  EEEEETT TGGG  EEEEE EETTEE SS SEEEE -------    SSS   TTSEEEEEE SSSSSS EEEEE SSSS:    
ExpBur          :bebbbbbbebbbbbeeeeebbbbbbbbbeeeebbbbbbbbbeeebbbeeebbebeb-------eeeeeeeebbbbebbebebebbebebbbbbbbbbbbb:    

queryA       606:QMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQI--KSLIPQFQGRLVANLTYTLQLDGHRTR---RRGLFPGGR---HELRR: 697
                :  *    ***          *         **           *   *     *   *        *    * **        ** **   *   *    :
6mk0_A_1     431:RAILYRARPVITVNAGLEVYPSILNQDNKTCSLPGTALKVSCFNVRFCLKADGKGVLPR-----KLNFQVELLLDKLKQKGAIRRALFLYSRSPSHSKNM: 525
SecStr          :EEEEE B  EEEEE  EEEE SEE TT   EE SSSS EE EEEEEEEEEEE SSS  S-----EEEEEEEEEESSSS SSS   EEETTT SSEEEEEE:    
ExpBur          :bbbbbbbbbbbebebebebeeeebebeeeebebeeeeeebbbbebebbbebebeeebee-----ebbbebebbbbeeeeeeeeebbbbbeeeeeeeeeeb:    
Contact         :                   bb      b             b                                                          

queryA       698:NIAVTTSMSCTDFSFHF--PVCVQDLISPINVSLNFSLWEEEGTPRDQR--AQGKDIPPILR---PSLHSETWEIPFEKNCGEDKKCEANLRVSFSPARS: 790
                : *     * *              *   **       *        * *  *      ***    *   *    *     ****  *   * **      :
6mk0_A_1     526:TISRGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRL--------DYRTAADTTGLQPILNQFTPANISRQAHILLD--CGEDNVCKPKLEVSVD-SDQ: 614
SecStr          :EEESSS  EEEEEEEEE  TTSS   SS EEEEEEEEE-------- TT   TTTS   EE SS  SEEEEEEEE  S-- TTTTS    EEEEE -   :    
ExpBur          :ebeeeeeeeeeebebbbeeeeebeeeeebbbbbbebee--------eeebeeebeebebebeeeeeeebeeebbbbee--beeeeebebebebebe-eee:    

queryA       791:RALRLTAFASLSVELSLSNLEEDAYWVQLDLHFPPGLSFRKVEMLKPHSQIPVSCEELPEESRLLSRALSCNVSSPIFKAGHSVALQMMFNTLVNSSWGD: 890
                :          *       *  * **   *    *    *  *           **    *      *   *    *  ***        *     *    :
6mk0_A_1     615:KKIYIGDDNPLTLIVKAQNQGEGAYEAELIVSIPLQADFIGV-VRNNEALARLSCAFKTENQ---TRQVVCDLGNPM-KAGTQLLAGLRFSVHQQSEMDT: 709
SecStr          : EEETTS  EEEEEEEEEE SS BTTEEEEEE  TT     B-  S SSS    EEEE  SS---  EEEEEEETTB- SEEEEEEEEEEE    TTT  :    
ExpBur          :eebebeeebebbbebebbbeeebbbebebbbebbebbebeeb-beeeeebeebebeeeeeee---eeebebebeebb-eeeeeeebbbebbbeeeeeeee:    

queryA       891:SVELHANVTCNN: 902
                :**         *:
6mk0_A_1     710:SVKFDLQIQSSN: 721
SecStr          :EE  EEEEE S :    
ExpBur          :ebebebebebeb:    


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