[pdbjlvh2]Protein Model on 5net_E_1_H

Protein Model on 5net_E_1_H_1 (TEMPLATE: 5net )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(ITAL_HUMAN)	E 1 (A)	polymer(polypeptide(L)) [589 aa]	Integrin alpha-V :ITAV_HUMAN
2	b		H 1 (D)	branched(oligosaccharide)	alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	434L(Y) 447Q(S) 450T(N) (identity: 0.0 %/32.1 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5net_E_1 identity=32.1%

queryA       403:YLGYTVTWLP-SRQKTSLLASGAPRY-QHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGE------QRGGRV: 494
                :**** *              ** **     * *        *   *      * *   ***      *   *       ******         *  * *:
5net_E_1     221:YLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYD----GKNMSSXYNFTGEQMAAYFGFSVAATDINGDDYADVF-IGAPLFMDRGSDGKLQEVGQV: 315
SecStr          : BTSEEEEE SSSSSS EEEEEETTHHHHT EEEEE ----TTT   - EEE SSTTS TTSEEEEE  SSSS  EEE-EEETT EEE TT  EEE  EE:    
ExpBur          :ebbbbbbbbebeeeeebbbbbbbbebeeebbbbbbbb----beebee-eebebeeeebebbbbbbbbbbbeeeebbbb-bbbbebeeeeeeeeeebbbbb:    
Contact         :                                 b            b  b                                                  

queryA       495:FIYQRRQLGFEEVSELQGDPGYPLGRFGEAITALTDINGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGIQW--------FGR: 583
                :     *  *      * *       *** **  * *   **  * *  **       * *******  **   ***  **       **        ** :
5net_E_1     316:SVSLQRASGDFQTTKLNGFEVF--ARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEG-------QWAARSCPPSFGY: 406
SecStr          :EEEEE TTS EEEEEEE SSTT--S TTSEEEEEESTT SSS EEEEEETT SGGG  EEEEEEB SSSB SS SEEEE -------    SSS   EEE:    
ExpBur          :bbbbbeeebeeeeeebebeeee--bebbbbbbebebbbeeeeebbbbbbbbbbeeebbbbbbbbbeeebbbeeeebebeb-------ebeeeeeebbbbe:    

queryA       584:SIHGVKDLEGDGLADVAVGA--ESQMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQI--KSLIPQFQGRLVANLTYTLQLDG: 679
                :*  *  *    *  *  ***      *    ***          *         **           *   *     *   *      *  *   *   *:
5net_E_1     407:SMKGATDIDKNGYPDLIVGAFGVDRAILYRARPVITVNAGLEVYPSILNQDNKTCSLPGTALKVSCFNVRFCLKADGKGVLPRKLNFQVELLLDKLKXXG: 506
SecStr          :EEEEEE SS SSS EEEEEEGGGTEEEEE B  EEEE  EEEEESSEE TT   SB TTSS B  EEEEEEEE EE SSS  SEEEEEEEEEESTT -- :    
ExpBur          :bbebebebbebebbbbbbbbbbbbebbbbbbbbbbebeeebebeeeebebeeeebebeeeeeebbbbebebbbebebeeebeeebebebebebbeee--e:    

queryA       680:HRTRRRGLFPGGR---HELRRNIAVTTSMSCTDFSFHF--PVCVQDLISPINVSLNFSL: 733
                :    ** **   *   *     *     * *              *   **       *:
5net_E_1     507:--AIRRALFLYSRSPSHSKNMTISRGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRL: 563
SecStr          :--   SEEETTTTBSEEEEEEEEETTS  EEEEEEEEE  GGG S  SS EEEEEEEEE:    
ExpBur          :--eeebbbbbeeeeeeeeeebebeeeeeeeeeebebbbeeeeebeeeeeebbbbbebeb:

Protein Model on 5net_E_1_H_1 (TEMPLATE: 5net )

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