Protein Model on 5ffo_A_1_L_1 (TEMPLATE: 5ffo )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(ITAL_HUMAN) A 1 (A) polymer(polypeptide(L)) [589 aa] Integrin alpha-V :ITAV_HUMAN
2 b L 1 (L) branched(oligosaccharide) alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 625S(Y) 626P 628E(I) 633E(N) 635E(T) 647G(C) 648V(F) 649N 709D(E) (identity: 22.2 %/32.4 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:5ffo_A_1 identity=32.4%
queryA       403:YLGYTVTWLP-SRQKTSLLASGAPRY-QHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGE------QRGGRV: 494
                :**** *              ** **     * *        *   *      * *   ***      *   *       ******         *  * *:
5ffo_A_1     221:YLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYD----GKNMSSLYNFTGEQMAAYFGFSVAATDINGDDYADVF-IGAPLFMDRGSDGKLQEVGQV: 315
SecStr          : BTSEEEEE  SSSSS EEEEEETTHHHHT EEEEE ----TTT  EEEEEE SSTTS TTSEEEEE  SSSS  EEE-EEETT EEE TTS EEE  EE:    
ExpBur          :ebbebbbbbebeeeeeebbbbbbbebeeeebbbbbbb----beebeeeeebebeeeebebbbbbbbbbbbeeeebbbb-bbbbebeeebeeeeeebbbbb:    

queryA       495:FIYQRRQLGFEEVSELQGDPGYPLGRFGEAITALTDINGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGIQW---------FG: 582
                :     *  *      * *       *** **  * *   **  * *  **       * *******  **   ***  **       **         **:
5ffo_A_1     316:SVSLQRASGDFQTTKLNGFEVF--ARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEG-------QWAARSGCPPSFG: 406
SecStr          :EEEEE TTS EEEEEEE SSTT--S TTSEEEEEESTT SSS EEEEEETT TGGG  EEEEE EETTEE SS SEEEE -------     SSS   EE:    
ExpBur          :bbbbbeeeeeeeeeebebeeee--bebbbbbbbbbbbbeeeeebbbbbbbbbbeeebbbbbbbbbeeebbbeeebbebeb-------ebeeeeeeebbbb:    

queryA       583:RSIHGVKDLEGDGLADVAVGA--ESQMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQI--KSLIPQFQGRLVANLTYTLQLD: 678
                : *  *  *    *  *  ***      *    ***          *         **           *   *     *   *        *    * **:
5ffo_A_1     407:YSMKGATDIDKNGYPDLIVGAFGVDRAILYRARPVITVNAGLEVYPSILNQDNKTCSLPXXXXKVSCFNVRFCLKADGKGVLPR-----KLNFQVELLLD: 501
SecStr          :EEEEEEE TTSSSS EEEEEEGGGTEEEEE B  EEEEEEEEEEE SB  SS B S   ----  BEEEEEEEEEEEESSS  S-----EEEEEEEEEES:    
ExpBur          :ebbebeeebbebebbbbbbbbbbbbbbbbbbbbbbbebeeebebeeeebeeeeeebeee----eebbbebebbbebebeeebee-----ebebebebebb:    
Contact         :                                            bb b    b b           bbb                               

queryA       679:GHRTR---RRGLFPGGR---HELRRNIAVTTSMSCTDFSFHF--PVCVQDLISPINVSLNFSL: 733
                :        ** **   *   *     *     * *              *   **       *:
5ffo_A_1     502:KLKQKGAIRRALFLYSRSPSHSKNMTISRGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRL: 564
SecStr          :TTS TTS   EEETTT SSEEEEEEEEESSS  EEEEEEEEE  GGG S  SS EEEEEEEEE:    
ExpBur          :eebeeeeeebbbbbeeeeeeeeeebebebeeeeeeeeeebbbeeeeebeeeeeebbbbbbbeb:    
Contact         :                                    b                                                               


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