Protein Model on 4g1m_A_1_E_1
(TEMPLATE: 
4g1m
)Protein Model on 4g1m_A_1_E_1
(TEMPLATE: 4g1m
)| CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(ITAL_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [929 aa] | Integrin alpha-V :ITAV_HUMAN | |
| 2 | b | E 1 (E) | branched(oligosaccharide) | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 399V(A) 400R(Q) 432R(M) 434L(Y) 447Q(S) 448V(L) 450T(N) (identity: 0.0 %/29.2 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:4g1m_A_1 identity=29.2% |
queryA 340:QDLTSFNMELSSSGISADLSRGHAVV-GAVGAKDWAGGFL-----DLKADLQDDTF---IGNEPLTPEVRA----GYLGYTVTWLP-SRQKTSLLASGAP: 425
:** * * * * * * * * * * * **** * ** *:
4g1m_A_1 145:QDIDADGQGFCQGGFSIDFTKADRVLLGGPGSFYWQGQLISDQVAEIVSKYDPNVYSIKYNNQLATRTAQAIFDDSYLGYSVAVGDFNGDGIDDFVSGVP: 244
SecStr :SS STTTTTT TTSEEEE TTSEEEEEETTHHHHTBEEEEEEHHHHHHT TT SS TT EE GGG S BTSEEEEE SSSS EEEEEET:
ExpBur :eebebebbbebebbebbebbeeebbbbbbbbbbeebbbbbbbebebbeeeeeeeeeeeebeeebebeeeeeeeeebebbbbbbbbebeeeeebbbbbbbb:
Contact : bb b
queryA 426:RY-QHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGE------QRGGRVFIYQRRQLGFEEVSELQGDPGYPL: 518
:* * * * * * * *** * * ****** * * * * * * * :
4g1m_A_1 245:RAARTLGMVYIYD----GKNMSSLYNFTGEQMAAYFGFSVAATDINGDDYADVF-IGAPLFMDRGSDGKLQEVGQVSVSLQRASGDFQTTKLNGFEVF--: 337
SecStr :THHHHT EEEEE ----TTT EEEEEE SSTTS TTSEEEEE SSSS EEE-EEETT EEE SSS EEE EEEEEEE TTS EEEEEEE SSTT--:
ExpBur :ebeeebbbbbbbb----beebeeeeebebebeebebbbbbbbbbbbeeeebbbb-bbbbebebebeeeeeebbbbbbbbbbeeebebeeeebebeeee--:
Contact : b b bb b
queryA 519:GRFGEAITALTDINGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGIQW--------FGRSIHGVKDLEGDGLADVAVGA--ES: 605
: *** ** * * ** * * ** * ******* ** *** ** ** ** * * * * * *** :
4g1m_A_1 338:ARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEG-------QWAARSMPPSFGYSMKGATDIDKNGYPDLIVGAFGVD: 430
SecStr :S TTSEEEEEE TT SSS EEEEEETT SGGG EEEEEEEETTEE SS SEEEE ------- SSS TTSEEEEEE TT SSS EEEEEEGGGT:
ExpBur :bebbbbbbebebbbeeeeebbbbbbbbbbeeebbbbbbbbbeeebbeeeeebebeb-------eeeeeeeebbbbebbebebebbebebbbbbbbbbbbb:
queryA 606:QMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQI--KSLIPQFQGRLVANLTYTLQLDGHRTR---RRGLFPGGR---HELRR: 697
: * *** * ** * * * * * * ** ** ** * * :
4g1m_A_1 431:RAILYRARPVITVNAGLEVYPSILNQDNKTCSLPGTALKVSCFNVRFCLKADGKGVLPR-----KLNFQVELLLDKLKQKGAIRRALFLYSRSPSHSKNM: 525
SecStr :EEEEE B EEEEEEEEEEE SEE TT EE SSSS EE EEEEEEEEEE SSS S-----EEEEEEEEEESTTS SSS EEETTT SSEEEEEE:
ExpBur :ebbbbbbbbbbebeeebebeeeebebeeeeeebeeeeeebbbbebebbbebebeeebee-----ebebebebebbeebeeeeeebbbbbeeebbeeeeeb:
queryA 698:NIAVTTSMSCTDFSFHF--PVCVQDLISPINVSLNFSLWEEEGTPRDQR--AQGKDIPPILR---PSLHSETWEIPFEKNCGEDKKCEANLRVSFSPARS: 790
: * * * * ** * * * * *** * * * **** * * ** :
4g1m_A_1 526:TISRGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRL--------DYRTAADTTGLQPILNQFTPANISRQAHILLD--CGEDNVCKPKLEVSVD-SDQ: 614
SecStr :EEESSS EEEEEEEEE TTT SS EEEEEEE -------- TTTS TT EE TTS SEEEEEEEE S-- TTTT EEEEE - :
ExpBur :ebeeeeeeeeeeeebbbeeeeebeeeeebbbbbbebeb--------eeeebeeeeebbbeeeeebeeeeeeebbbbee--beeeeebebebebebe-eee:
queryA 791:RALRLTAFASLSVELSLSNLEEDAYWVQLDLHFPPGLSFRKVEMLKPHSQIPVSCEELPEESRLLSRALSCNVSSPIFKAGHSVALQMMFNTLVNSSWGD: 890
: * * * ** * * * * ** * * * * *** * * :
4g1m_A_1 615:KKIYIGDDNPLTLIVKAQNQGEGAYEAELIVSIPLQADFIGV-VRNNEALARLSCAFKTENQ---TRQVVCDLGNPM-KAGTQLLAGLRFSVHQQSEMDT: 709
SecStr : EETTSEEEEEEEEEEEE SS BTTEEEEEE TTEEEEEE- S TTSB EEEEE TT--- EEEEEEETTB- TT EEEEEEEEEEE SS S:
ExpBur :eebebbeebebebebebbbeeebbbebebbbebbeebeeebb-beeeeebeebebeeeeeee---eebbbbebeebb-eeeeeeebbbebbbebeeeeee:
queryA 891:SVELHANVTCNN: 902
:** *:
4g1m_A_1 710:SVKFDLQIQSSN: 721
SecStr :EEEEEEEEE S :
ExpBur :bbebebebebeb:
|
[assembly_id:1]
[help]