Protein Model on 4cak_A_1_I_1 (TEMPLATE: 4cak )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(ITAL_HUMAN) A 1 (A) polymer(polypeptide(L)) [913 aa] Integrin alpha-IIb :ITA2B_HUMAN
2 b I 1 (A) non-polymer(NAG) 2-acetamido-2-deoxy-beta-D-glucopyranose 566S 614P 672T(N) 730N 731F(V) 732S 733L (identity: 71.4 %/30.9 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:4cak_A_1 identity=30.9%
queryA       396:TPEVRAGYLGYTVTW--LPSRQKTSLLASGAPRYQH-MGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGEQRG-: 491
                : **   ** ** *          *     ***      * *                   * *  ****      **  **   **  **** * * *  :
4cak_A_1     227:NPEYFDGYWGYSVAVGEFDGDLNTTEYVVGAPTWSWTLGAVEILDS-----YYQRLHRLRGEQMASYFGHSVAVTDVNGDGRHDLL-VGAPL-YMESRAD: 319
SecStr          : GGGTT  TTSEEEEE  SS SSS EEEEEETTTTTTT EEEEE T-----TS EEEEEE SSTTS TTSEEEEE SSSSSSBEEE-EEETT- EE  SS:    
ExpBur          :eebbeebebbebbbebbbeeeeeebbbbbbbbbbbeeebbbbbbbe-----ebeeebbbebeeeebbbbebbbbbbbbbbbbebbb-bbbbe-bbeeeee:    

queryA       492:------GRVFIYQR----RQLGFEEVSELQGDPGYPLGRFGEAITALTDINGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGI: 578
                :      ***           **      * *   *  **** **  * *   **  * ** **       * *  * *   **   ***           :
4cak_A_1     320:RKLAEVGRVYLFLQPRGPHALGAPSLL-LTGTQLY--GRFGSAIAPLGDLDRDGYNDIAVAAPYGGPSGRGQVLVFLGQSEGLRSRPSQVLDSPFPTGSA: 416
SecStr          : TTEE  EEEEE   SSSSEE S SEE-EE  STT--S TTSSEEEEESSSSSSS EEEEEETT SSSSS EEEEE EETTEE SS SEEEE SS TTS :    
ExpBur          :eeebebbbbbbbbbbbbbbbbbbbbbb-bbbeeee--bebbbbbbebbbbbbbebebbbbbbbebbeebebbbbbbbbbbbbbbbeeeeebebebeeebb:    
Contact         :                                                                                       b            

queryA       579:QWFGRSIHGVKDLEGDGLADVAVGA--ESQMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQIKSL-IPQFQGRLVANLTYTL: 675
                :  ** *  *  *    *  *  ***    *  *    ***             *     *            **  *       ***        *   *:
4cak_A_1     417:--FGFSLRGAVDIDDNGYPDLIVGAYGANQVAVYRAQPVVKASVQLLVQDSLNPAVK-SCVLPQTKTPVSCFNIQMCVGATGHNIPQ-----KLSLNAEL: 508
SecStr          :--EEEEEEEEE SSBSSS EEEEEETTTTEEEEE     EEEEEEEEE S B TT  - EE SSS  EEEEEEEEEEEEEE TT  S-----S EEEEEE:    
ExpBur          :--bbebbebeebbbebbbbbbbbbbeebeebbbbbbbbebebebebebeeebeeeee-ebebeeeeeebbbbebebbbbbeeeeeee-----ebebebeb:    
Contact         :                                     b                                                          b   

queryA       676:QLDGHRTR--RRGLFPGGRHELRRNIAVTTSMSCTDFSFHFPVC------------VQDLISPINVSLNFSLWEEEGTPRDQRAQGKDIPPILRPSLHSE: 761
                :***    *  ** *  *            *         * * *              *  ***  *** **   *         *      *    *  :
4cak_A_1     509:QLDRQKPRQGRRVLLLGSQQ-------AGTTLNLDLGGKHSPICHTTMAFLRDEADFRDKLSPIVLSLNVSLPPTEA--------GMAPAVVLHGDTHVQ: 593
SecStr          :EETTTS GGG SEEETTT S-------SEEEEEEE TT SS EEEEEEEEE  GGG    SS EEEEEEEE     T--------T   B  EEE  EEE:    
ExpBur          :bbbeeeeeeebbbbbbeeee-------beeeeebebbeeeeebeeeeebbbeeeeebeeeeebbbbbbebbbeebee--------eeebbbbbbbbbbbb:    
Contact         :                                                                    bbbb                            

queryA       762:TWEIPFEKNCGEDKKCEANLRVSFSPARSRALRLTAFASLSVELSLSNLEEDAYWVQLDLHFPPGLSF-RKVEMLKPHSQIPVSCEELPEESRLLSRALS: 860
                :         ****  *   *    *   *  *   *   *       *  * **   *  * * *    *              *    *      *   :
4cak_A_1     594:E-QTRIVLDCGEDDVCVPQLQLTASVTGS-PLLVGADNVLELQMDAANEGEGAYEAELAVHLPQGAHYMRALSNVEGFERL--ICNQKKENE---TRVVL: 686
SecStr          :E-EE B    TTTT     EEEEEEEES -SEETTS   EEEEEEEEE SS BTTEEEEEE  TTEEEEEEEE  --  BB-- EEEE SSS---S EEE:    
ExpBur          :b-bbbbeeebbbbbbbbbebebeeeeeee-ebeeeeebebebebebbbebbbbbbbbbbbbbbebbbbbebebee--eebb--bbbbbbeee---ebbbb:    

queryA       861:CNVSSPIFKAGHSVALQMMFNTLVNSSWGDSVELHANVTCNNEDS: 905
                :*    *  *        *          * **         *   :
4cak_A_1     687:CELGNPM-KKNAQIGIAMLVSVGNLEEAGESVSFQLQIRSKNSQN: 730
SecStr          :EEEETTB- TTEEEEEEEEEEE   TT  SEEEEEEEEE   SSS:    
ExpBur          :bbbbbbb-eeeeebbbebbbbbeeeeeeeebbbbebbbbbbbbbe:    


Input Residue Numbers for Focused Sites

ex) 2,15,123