[pdbjlvh2]Protein Model on 3vi4_A_1_J

Protein Model on 3vi4_A_1_J_1 (TEMPLATE: 3vi4 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(ITAL_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [601 aa]	Integrin alpha-5 :ITA5_HUMAN
2	b		J 1 (I)	polymer(polypeptide(L)) [3 aa]	RGD peptide	371K(Y) 372D(F) 374A(Q) 398E(Q) 401A(S) (identity: 0.0 %/32.6 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:3vi4_A_1 identity=32.6%

queryA       353:GISADLSR-GHAVVGAVGAKDWAGGFLDLKADLQDDTF--------IGNEPLTPEVRA----GYLGYTVTWLP-SRQKTSLLASGAPRYQ-HMGRVLLFQ: 437
                :* **     *  * *  *   * *  *                         *          **** *     *   *     * *      * *    :
3vi4_A_1     167:GFSAEFTKTGRVVLGGPGSYFWQGQILSATQEQIAESYYPEYLINLVQGQLQTRQASSIYDDSYLGYSVAVGEFSGDDTEDFVAGVPKGNLTYGYVTILN: 266
SecStr          :TSEEEE TT  EEEEETTHHHHTBEEEEE HHHHHHH  TTSS    TT EE     GGG S  BTSSEEEE  SSSSS EEEEEEEEEETTEEEEEEE :    
ExpBur          :bebbebbeebbbbbbbbbbbeebbbbbbbebebbeebbeeeebeeebeebbebeeeeeeeeebebbbbbbbbbbbeeeeebbbbbbbeeeeeebbbbbbb:    
Contact         :                   bb b                               b  b  b                                       

queryA       438:EPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGE------QRGGRVFIYQRRQLGFEEVSELQGDPGYPLGRFGEAITALTDI: 531
                :    *          * *  ****      **  **   **  ****          *  ***  *     * *    *        ****   * * * :
3vi4_A_1     267:----GSDIRSLYNFSGEQMASYFGYAVAATDVNGDGLDDLL-VGAPLLMDRTPDGRPQEVGRVYVYLQHPAGIEPTPTLTLTGHDEFGRFGSSLTPLGDL: 361
SecStr          :----TTT  EEEEEE SSTTS TTSEEEEE  SSSS  EEE-EEETT EEE TT  EEE  EEEEE EETTEE SS SEEEE  STT  GGGEEEE   T:    
ExpBur          :----beebeeeeebebeeeebbbbebbbbbbbbeeeeebbb-bbbbebeeebeeeeeebbbbbbbbbbeeeebeeeeeeebebeeeebebbbbbbebebb:    

queryA       532:NGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGI-QWFGRSIHGVKDLEGDGLADVAVGA--ESQMIVLSSRPVVDMVTLMSFS: 625
                :  **  *** ***      ** *  * *  ***   ***        *     **    *  ** * *  *  **        *   ** *         :
3vi4_A_1     362:DQDGYNDVAIGAPFGGETQQGVVFVFPGGPGGLGSKPSQVLQPLWAASHTPDFFGSALRGGRDLDGNGYPDLIVGSFGVDKAVVYRGRPIVSASASLTIF: 461
SecStr          :T SSS  EEEEETT STTSSBEEEEE EETTEE SS SEEE  SS   SS   BTSEEEEEE  SSSSS EEEEEEGGGTEEEEE B  EEEEEEEEEET:    
ExpBur          :beeeeebbbbbbbebbeeebbbbbbbbbeeebbeeeebbebebeeeeeeeebebbebbbbeeebbebebbbbbbbbbbbbebbbbbbbbbbebebebebe:    

queryA       626:PAEIPVHEVECSYSTSNKMKEGVNITICFQIKSLIPQFQGRLVAN---LTYTLQLDGHRTR---RRGLFPGGRHE-LRRNIAVTTSM--SCTDFSFHF--: 714
                :**     *  *  *         *   *           *  **     *  ****        ** **   *   *             *         :
3vi4_A_1     462:PAMFNPEERSC--SLEGNPVACINLSFCLNAS-------GKHVADSIGFTVELQLDWQKQKGGVRRALFLASRQATLTQTLLIQNGAREDCREMKIYLRN: 552
SecStr          :T EE TT   E--ESSSSEE EEEEEEEEEEE------- TTS SEEEEEEEEEETGGGTTTS   EEETTTSSSEEEEEEEEETT     EEEEEEE S:    
ExpBur          :eeebeeeeeeb--eeeeeebbbbebebbbebe-------beebeeebebebebbbbbeeeeeeeebbbbeeeeebeeeeebebebeeeeeeeebebbbee:    

queryA       715:PVCVQDLISPINVSLNFSLWEEEGTPRDQRAQGKDIPPILRPSLHSET: 762
                :     *  ***   *****      * *           *** **   :
3vi4_A_1     553:ESEFRDKLSPIHIALNFSL--DPQAPVDSHG--------LRPALHYQS: 590
SecStr          : S  S  SS EEEEEEEEE-- SSS   SSS--------   EE TTS:    
ExpBur          :eeebeeeeeebbbbbebeb--eeeeeeeeee--------bebbeeeeb:

Protein Model on 3vi4_A_1_J_1 (TEMPLATE: 3vi4 )

Input Residue Numbers for Focused Sites