Protein Model on 1l5g_A_1_C_1 (TEMPLATE: 1l5g )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(ITAL_HUMAN) A 1 (A) polymer(polypeptide(L)) [927 aa] INTEGRIN ALPHA V
2 b C 1 (C) polymer(polypeptide(L)) [5 aa] CYCLIC ARG-GLY-ASP PEPTIDE 345F(D) 372D(Y) 374A(Q) (identity: 0.0 %/29.2 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:1l5g_A_1 identity=29.2%
queryA       340:QDLTSFNMELSSSGISADLSRGHAVV-GAVGAKDWAGGFL-----DLKADLQDDTF---IGNEPLTPEVRA----GYLGYTVTWLP-SRQKTSLLASGAP: 425
                :**           * * *      *  *  *   * *                        *   *    *     **** *              ** *:
1l5g_A_1     145:QDIDADGQGFCQGGFSIDFTKADRVLLGGPGSFYWQGQLISDQVAEIVSKYDPNVYSIKYNNQLATRTAQAIFDDSYLGYSVAVGDFNGDGIDDFVSGVP: 244
SecStr          :SS GGGTTTB  TTSEEEE TTSEEEEEETBHHHHTBEEEEEEHHHHHHT  TT SS   TT EE     GGGTT  BTSEEEEE  SSSSS EEEEEET:    
ExpBur          :eebebebbbebebbebbbbbeeebbbbbbbbbbeebbbbbbbebebbeeeeeeeeebeebeeebebeeeeeeeeebebbebbbbbebbeeeebbbbbbbb:    
Contact         :     b                           b b                                     b                          

queryA       426:RY-QHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGE------QRGGRVFIYQRRQLGFEEVSELQGDPGYPL: 518
                :*     * *        *   *      * *   ***      *   *       ******         *  * *     *  *      * *      :
1l5g_A_1     245:RAARTLGMVYIYD----GKNMSSLYNFTGEQMAAYFGFSVAATDINGDDYADVF-IGAPLFMDRGSDGKLQEVGQVSVSLQRASGDFQTTKLNGFEVF--: 337
SecStr          :THHHHTBEEEEE ----SSS  EEEEEE SSTTS BTSEEEEE TTSSS  EEE-EEETT EEE TTS EEE  EEEEEEE TTS EEEE  B SSTT--:    
ExpBur          :ebeeeebbbbbbb----beebeeeeebebeeeebebbbbbbbbbbbeeeebbbb-bbbbebeeebeeeeeebbbbbbbbbbeeebebeeeebebeeee--:    

queryA       519:GRFGEAITALTDINGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGIQW--------FGRSIHGVKDLEGDGLADVAVGA--ES: 605
                : *** **  * *   **  * *  **       * *******  **   ***  **       **        ** *  *  *    *  *  ***    :
1l5g_A_1     338:ARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEG-------QWAARSMPPSFGYSMKGATDIDKNGYPDLIVGAFGVD: 430
SecStr          :S GGGEEEE S TT SSS  EEEEETT SGGG  EEEEEEEETTEEEEEEEEEEE -------    TTS   TTSEEEE S  SSSSS  EEEEETTTT:    
ExpBur          :bebbbbbbebbbbbeeeeebbbbbbbbbbeeeebbbbbbbbeeebbeeeebbebeb-------eeeeeeeebbbbebbebeeebbebebbbbbbbbbbbb:    

queryA       606:QMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQI--KSLIPQFQGRLVANLTYTLQLDGHRTR---RRGLFPGGR---HELRR: 697
                :  *    ***          *         **           *   *     *   *        *    * **        ** **   *   *    :
1l5g_A_1     431:RAILYRARPVITVNAGLEVYPSILNQDNKTCSLPGTALKVSCFNVRFCLKADGKGVLPR-----KLNFQVELLLDKLKQKGAIRRALFLYSRSPSHSKNM: 525
SecStr          :EEEEE B  EEEEEE  EES SS  TT   EE SSS  EEEEEEEE  EEEE  SS  S-----   B  EEESS S  TT    EEETTS  SEEE  B:    
ExpBur          :bbbbbbbbbbbebeebbebeeeebeeeeeebebeeeeeebbbbebebbbebebeeebee-----ebebebbbbbbeebeeeeebbbbbbeeeebeeeeeb:    

queryA       698:NIAVTTSMSCTDFSFHF--PVCVQDLISPINVSLNFSLWEEEGTPRDQR--AQGKDIPPILR---PSLHSETWEIPFEKNCGEDKKCEANLRVSFSPARS: 790
                : *     * *              *   **       *        * *  *      ***    *   *    *     ****  *   * **      :
1l5g_A_1     526:TISRGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRL--------DYRTAADTTGLQPILNQFTPANISRQAHILLD--CGEDNVCKPKLEVSVD-SDQ: 614
SecStr          :   SSS     EEEEEE  GGG   S   EEEEEE  B-------- SS S TTTT   EE TT  S EEEEE    S--  SS S    EEEEE - TT:    
ExpBur          :ebbeeeeeeeeebebbbeeeeebebebebbbbebebeb--------eeebeeebeebebbeeeeeeeeeeeebbbbee--beeeeebebebbbebe-eee:    

queryA       791:RALRLTAFASLSVELSLSNLEEDAYWVQLDLHFPPGLSFRKVEMLKPHSQIPVSCEELPEESRLLSRALSCNVSSPIFKAGHSVALQMMFNTLVNSSWGD: 890
                :          *       *  * **   *    *    *  *           **    *      *   *    *  ***        *     *    :
1l5g_A_1     615:KKIYIGDDNPLTLIVKAQNQGEGAYEAELIVSIPLQADFIGV-VRNNEALARLSCAFKTENQ---TRQVVCDLGNPM-KAGTQLLAGLRFSVHQQSEMDT: 709
SecStr          : EEESSS EEEEEEEEEEE SS BSS EEEEE  SS  EEE -  S SSSB      EE SS---SEE  EE  SSB- TTEE  BEEEEEE   TT  S:    
ExpBur          :eebebbeebebbbebebbbeeebbbebebbbebeebbebebb-beeeeebeebebeeeeeee---ebbbbbebeeeb-eeeeeeebbbebbbeeeeeeee:    

queryA       891:SVELHANVTCNN: 902
                :**         *:
1l5g_A_1     710:SVKFDLQIQSSN: 721
SecStr          :EEEEEEEEE S :    
ExpBur          :bbebebbbebeb:    


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