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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS2) | D 1 (B) | polymer(polypeptide(L)) [1031 aa] | Spike glycoprotein :SPIKE_SARS2 | |
2 | b | UA 1 (B) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | 709N 1131G (identity: 100.0 %/91.5 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7knh_D_1 identity=91.5% |
queryA 26:PAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATN: 125 :***************************************** ***********************************************: 7knh_D_1 26:PAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHXXXXXXXXXXXXFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATN: 125 SecStr : EEEE S B SSS S EEEE B TTEEEEEE ------------ EE S EEEEE SS EEEEEEESS SSSS EEEEE SS : ExpBur :eeebebebbbbbbbeeeeeeeeebebeebbbbbebebbbee------------eeeeebebeebbbbbbbbeeeebebbbbbeebeeebbbbbebbeeee: queryA 126:VVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEP: 225 :**************** ************************* ****************************************: 7knh_D_1 126:VVIKVCEFQFCNDPFLXXXXXXXXXXXMESEFRVYSSANNCTFEYVSQPFLMXXXXXXXXFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEP: 225 SecStr :EEEE S SS ----------- TT S EE -------- EEEEEEETTEEEEEE S TTS S BEE: ExpBur :bebebbbbeeeeeeeb-----------eeeeeebeeeeeeeeeeeeeeeeee--------eeebbbbbbbeeeeebbbbbeeeebeeeeebbeeebbbee: queryA 226:LVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTES: 325 :********************* *****************************************************************: 7knh_D_1 226:LVDLPIGINITRFQTLLALHRXXXXXXXXXXXXXXGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTES: 325 SecStr :EEEE EEEEEE -------------- EEE B EEEEE TTS EEEEEESSS HHHHHHHHHT SS SEEEEEEEEB SS : ExpBur :eeebeeeeebeebbbbeeeee--------------eebbbbbbebeebebbbebeeebebeebbbbeeeebbbbbbeeeebebeebeeebbebebeeeee: queryA 326:IVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKL: 425 :****************************************************************************************************: 7knh_D_1 326:IVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKL: 425 SecStr :EE B THHHHT S STT B SSB HHHHT S BS EEES TTTTTTS S EEEEEE GGGTTT STT SSHHHHT : ExpBur :bebeeeeeeebeeeebbeeeebbbbeebeeeebeebbbebeebeeeeeeeeeeeeeeeeeebbeebebbbebbbbbbebebbeebbeeeeeebbbebbeb: queryA 426:PDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVC: 525 :****************************************************************************************************: 7knh_D_1 426:PDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVC: 525 SecStr : TT EEEEEEE TTTS TT TT EEE SS SS SSS SS SS EEE TTS GGGS EEEEEEE S S : ExpBur :eeebebbbbbbebeeebeeeebbeebbbbeeeeeebeeeeebeeeeeeeeeeeeeeeeeeebbeebeeebebeeeeeeeebbbbbbbbbbeeeeeeeeee: queryA 526:GPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIH: 625 :****************************************************************************************************: 7knh_D_1 526:GPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIH: 625 SecStr :S SSEEEEE SS EEEEEEEE TT SEEE SSS EEEEEETTTTEEEEEE EEEEEEES TTT S EEE SS TTSSSS B : ExpBur :bbeeeeeeeeeebbebebeebeeebbbeebeeeeeeeeeebeeeeeeeebbbbbeeeebbebeebeebbbbbbbbbeeebeebbbbbeebebeebeeeee: queryA 626:ADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTE: 725 : *************************************** ************************************: 7knh_D_1 626:XXXXXXXXXXXXTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXXQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTE: 725 SecStr :------------ EEEETTEEEES EEEEEEE SEEEETTEEEEE ------------- EEEEEE S BTTEEEEEEEEEEEEE : ExpBur :------------eeeeeeebebbbbbebeebeeeeeeebebeeebbbbeee-------------eebbbbeebeeeeeeeeeeeeeeebbeebebebeee: Contact : b queryA 726:ILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNK: 825 :****************************************************************************************************: 7knh_D_1 726:ILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNK: 825 SecStr :EEE EEE SHHHHT S HHHHHHHHTT SHHHHHHHHHHHHHHHHHHHHHHHH SSS SS BTTB TTTS SSS SSS HHHHHHHHH: ExpBur :bbbbbbebbebebeebbbbebeebeebbeeeeeebeebeeebeebbeebbebbeebbeebeeebebeeeeebeebebeebbbeeebeeebbebbebbbee: queryA 826:VTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIAN: 925 :*** **************************************************************************: 7knh_D_1 826:VTLXXXXXXXXXXXXXXXXXXXXXXXAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIAN: 925 SecStr :S ----------------------- SSEEE SS HHHHHHHHHHHHHHHHHTTTGGGTSS HHHHHHHHHHTTT THHHHHTHHHHHH: ExpBur :bee-----------------------eeeeebbeeeeeebeeeebbeebbbbbbbbbebbebbeeeeeeeeebeebbbebbebbebeeebbeeeeeebbe: queryA 926:QFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLA:1025 :************************************************************ **************************************: 7knh_D_1 926:QFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLA:1025 SecStr :HHHHHHHHHHHHTTS TTTHHHHTTHHHHHHHHHHHHHHT TTSS SSSHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :ebeebbeebeeebeeebeebeebeebbeebbebbeebeeeeeeeeebebbebeebeeeeeeeebeeebeebbeebbebbeebbeebeeebeebeeebeeb: queryA 1026:ATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGN:1125 :****************************************************************************************************: 7knh_D_1 1026:ATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGN:1125 SecStr :HHHHHHHTTS STTSSSSSEEEEE EE SSEEE EEEEEEEEEEEEE S EEETTEEEEESSSEEEESSSSEEEE SSS EE BSTTEEE S : ExpBur :bebbeebbbbebeeeebbbeeebbbbbbbbbbebbbbbbbbbeeeeeeebebbebbbeeeebbebeebbbbbeeeebbbbbebbbeeeebbeebbeeeee: queryA 1126:CDVVIGIVNNTVYDPLQPELDSFK:1149 :************************: 7knh_D_1 1126:CDVVIGIVNNTVYDPLQPELDSFK:1149 SecStr :TTTSSS EE B THHHHHHH : ExpBur :eeeeeebeeeebeeeeeeeeeeee: Contact : b |