Protein Model on 7k43_G_1_D_1
(TEMPLATE: 
7k43
)Protein Model on 7k43_G_1_D_1
(TEMPLATE: 7k43
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DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(SPIKE_SARS2) | G 1 (E) | polymer(polypeptide(L)) [1034 aa] | Spike glycoprotein :SPIKE_SARS2 | |
| 2 | b | D 1 (B) | polymer(polypeptide(L)) [1034 aa] | Spike glycoprotein :SPIKE_SARS2 | 38Y 40D 41K 42V 43F 44R 47V 224E 225P 230P 282N 369Y 370N 371S 372A 385T 427D 737D 740M 745D 755Q 756Y 757G 758S 759F 762Q 765R 784Q 786K 787Q 788I 789Y 790K 792P 796D 797F 849L 852A 854K 855F 857G 861L 862P 863P 864L 865L 866T 869M 872Q 873Y 883T 886W 889G 890A 894L 895Q 896I 897P 898F 900M 904Y 907N 913Q 914N 917Y 918E 920Q 963V 967S 978N 981L 982S 983R 984L 985D 1005Q 1009T 1012L 1013I 1019R 1027T 1030S 1031E 1034L 1039R 1111E (identity: 100.0 %/91.7 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:7k43_G_1 identity=91.7% |
queryA 15:CVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKT: 114
:**************************************************** *************************************:
7k43_G_1 34:CVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHXXXXXXXXXXXRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKT: 133
SecStr : EEEE TT EE SS SEEEEEEEEE TT EEEEE ----------- EEE SEEEEEEEESS EEEEEEESS BSSS:
ExpBur :eeebeeeeeeeeeebebebbbbbbbeeeeeeeeeeebeebbbbbeeebebbe-----------ebebeebebeebbbbbbbbeebbbbbbbbbeebeeee:
Contact : b bbbbb b
queryA 115:QSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVR: 214
:***************************** ***************************** ******************************:
7k43_G_1 134:QSLLIVNNATNVVIKVCEFQFCNDPFLGVXXXXXXXXWMESEFRVYSSANNCTFEYVSQPFLMDLEXXXXNFKNLREFVFKNIDGYFKIYSKHTPINLVR: 233
SecStr : EEEEE SS EEEE SEEEEEEEEEE -------- EEEEEEEE EEE ---- EEEEEEEEEETTEEEEEEEEEE SS:
ExpBur :ebbbbbeeeebebbebbbbebbebbbbbe--------eeeeeeebeeeeeeeeeeeebeeeebebe----ebeebebbbbbeeeeebebbeeebebeeee:
queryA 215:DLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQ: 314
:***************************** *********************************************************:
7k43_G_1 234:DLPQGFSALEPLVDLPIGINITRFQTLLAXXXXXXXXXXXXXXWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQ: 333
SecStr : S EEEEEEEE SEEEEEE -------------- SEEEEEEE EEEEEEEEE TTS EEEEEETTSSHHHHHHHHTTSS SEEEE:
ExpBur :ebeeeebbbeeeeebebebebeebbbbbb--------------eeeeebbbbbbebeebebbbebeeebebeebbbbeeeebbebbbeeeebebeebeee:
Contact : bb b b
queryA 315:TSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQ: 414
:****************************************************************************************************:
7k43_G_1 334:TSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQ: 433
SecStr :EEEEE EEEEE B TTHHHHT S BGGG EEEEE SEE HHHHS SS SEEEEESS TTSGGG EESEEEEEEEEEEGGGGGGSSTT :
ExpBur :beebeeeeeeebbbbeeeeeebebeebbeeeebbbbbbbeeeebeebbbebeebeeeeeeebbebeebeeeebeeebbbbbebbbbbbbbebbebbbeee:
Contact : bbbb b
queryA 415:TGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLS: 514
:****************************************************************************************************:
7k43_G_1 434:TGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLS: 533
SecStr : SHHHHHT TT EEEEEEE HHHH SS B EEE SS TT EE SSS TT BTTEE SEEE B TTS GGGSEEEEEEEE:
ExpBur :eeebbbebbbbbeebebbbbbbebbeebbeeebbeebebbeebeeebeeeeebeeeebeeeeeeebeeeeeeebeebbebbebeeeeeebebbbbbbbbb:
Contact : b
queryA 515:FELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQD: 614
:****************************************************************************************************:
7k43_G_1 534:FELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQD: 633
SecStr :EE SS EE S SSEEEEEETTEEEEEEEEE TT EEE TTS EEEEE SSS EEEEE EEEEEEEE TTT S EEEEET:
ExpBur :beeeeeebebbbeeeeeeebeeebbebbbeeeeeebbbeebeeebeeeeeebeeeeeeebbbbbeeeeebbbbeebeebbbbbbbbbeeebeebbbbeee:
queryA 615:VNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAI: 714
:******* *********************************** *************************:
7k43_G_1 634:VNCTEVPXXXXXXXXXXXXXXXXXXXNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQXXXXXXXXXXXXXXQSIIAYTMSLGAENSVAYSNNSIAI: 733
SecStr : TTT ------------------- EEEETTEEEES EE S SEEEETTEEEEE -------------- EEEEE TTEEE :
ExpBur :bebeebe-------------------eebebeebbbeebeebeeeeeeebebeeebbbbee--------------eebbbbeeeeeeeeeeeeeeeeeeb:
queryA 715:PTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSK: 814
:****************************************************************************************************:
7k43_G_1 734:PTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSK: 833
SecStr : S EEEEEEEEEEE EEEE HHHHHHTT HHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHH SS SS TT TTTSB TTSSS :
ExpBur :eeebebebeeebbbbbbebbebebeebbbeebeebeebbeeeeeebeebeeebeebbebbeebbeebbeebeeebeeeeeeebeebebebbbeeeeeebe:
Contact : b b b bbbbb b b b bbbbb b bb
queryA 815:RSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQN: 914
:************ ******************************************************************:
7k43_G_1 834:RSFIEDLLFNKVXXXXXXXXXXXXXXXXXXXXXXLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQN: 933
SecStr : BHHHHHHHHH ---------------------- HHHHHTTTEEEE SS HHHHHHHHHHHHHHHHHHTTGGGSSS HHHHHHHHHHHTT HH:
ExpBur :bbebbbbbbeee----------------------eeeebeeebbeeeeeebeeeebbeebebbbbbbbebbeebeeeeeeebebbebbbebbeebebeee:
Contact : b b bb b bbbbbb b bb b b bb bbbbb b b b bb
queryA 915:VLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIR:1014
:*********************************************************************** ***************************:
7k43_G_1 934:VLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIR:1033
SecStr :HHHHTHHHHHHHHHHHHHHHHHHHHH GGGGHHHHHHHHHHHHHHHHHHHGGG TTSS S HHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHHHHHH:
ExpBur :bbeeeeeebbebbeebbeebeeebeeeeeebeebeebeeebeebbeebbeebeeeeebebbebeebeeeeeeeebeebbeebbebbbebbeebbeebeeb:
Contact : bb b b b b bbbbb b b bb
queryA 1015:AAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQI:1114
:****************************************************************************************************:
7k43_G_1 1034:AAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQI:1133
SecStr :HHHHHHHHHHHHHHHHHHTSS STTTSSSSEEEEEEEEEETTEEEEEEEEEEE S EEEEES EESSSEEEEESSSEEEESSS EEEE TTS EE:
ExpBur :beebeebbeebbebbeebbbbbbeeeebbbeeebbbbbbbbbbebbbbbbbbbeeeeeeebebbebbbeeeebbebeebbbbbeeeebbbbbeebbbeee:
Contact : b b bb b b b
queryA 1115:ITTDNTFVSGNCDVVIGIVNNTVYDP:1140
:**************************:
7k43_G_1 1134:ITTDNTFVSGNCDVVIGIVNNTVYDP:1159
SecStr : BTTSEEEEEETTT TT EE B :
ExpBur :bbeebbeeeeebeebeeeeeeebeee:
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[assembly_id:1]
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