Protein Model on 7jwy_B_1_L_1 (TEMPLATE: 7jwy )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(SPIKE_SARS2) B 1 (B) polymer(polypeptide(L)) [1061 aa] Spike glycoprotein :SPIKE_SARS2
2 b L 1 (L) branched(oligosaccharide) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 706A 1072E 1074N (identity: 100.0 %/94.5 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7jwy_B_1 identity=94.5%
queryA        27:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 126
                :*******************************************          ***********************************************:
7jwy_B_1      14:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHXXXXXXXXXXDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 113
SecStr          : EEE SS  EE  SS    S EEEEEEEE  TT EEEE     ----------    EE SS EEEEEE SS  EEEEEEES  SSSS EEEEEE SS E:    
ExpBur          :eebebbbbbbbeeeeeeeeeeeeebeebbbbbeeebebbeeee----------eeeebebeebbbbbbbeeeeebebbbbbeebeeeeebbbbbeeeeee:    

queryA       127:VIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 226
                :*****************          *******************             *****************************************:
7jwy_B_1     114:VIKVCEFQFCNDPFLGVXXXXXXXXXXESEFRVYSSANNCTFEYVSXXXXXXXXXXXXXFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 213
SecStr          :EEE  EEEEEEEEEE  ----------   EEEEEEEES   EEE -------------   EEEEEEE  TT EEEEEEEE    SSS  SS  EEEEE:    
ExpBur          :ebbbbbbebeeebbbbe----------eeeeebeeeeeeeeeeeee-------------eeebebbbbbeeeeebebbbeeeebeeeeebeeeebbbeee:    

queryA       227:VDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 326
                :*************************             **************************************************************:
7jwy_B_1     214:VDLPIGINITRFQTLLALHRSYLTPXXXXXXXXXXXXXYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 313
SecStr          :EEE       EEEEEEE SS     ------------- EEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHHTSS   SEEEEEEEEE    EE :    
ExpBur          :eebebebebeebbbbbeeeeeeeee-------------bbbbebeebebbbebeeebebeebbbbebebbbbbbbeeeeeebeeeeeebeebebeeeeeb:    

queryA       327:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 426
                :****************************************************************************************************:
7jwy_B_1     314:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 413
SecStr          : B      B  SHHHHT SS   SSS EEEEE S B  THHHHSS   SEEEESSS GGGTTT EEEEEEEEEEEE GGGGGGSSSS  STTTTTT    :    
ExpBur          :bbbeeeeeebebeebbeeeebebbbebeeeebeebbbebeebeeeeeeeeeebeebeeeebbebbbbebebbbbbbbeebeebbeeeeeeebbbebbebb:    

queryA       427:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 526
                :******************  ********************************************************************************:
7jwy_B_1     414:DDFTGCVIAWNSNNLDSKXXGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 513
SecStr          :SS  EEEEEEE TTTS  -- B   EEE   SS   TT        B  SSS   SS  TT B SEEE  B TT  TTSS EEEEEEEEEESSS   EE :    
ExpBur          :eebebbbbbbebbeebee--ebeebebbeebeeebeeeeeeeeeebeeeeeeebeeeeeeebeebbebbebeeeeeeeebbbbbbbbbbeeeeeeeebbb:    

queryA       527:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHA: 626
                :****************************************************************************************************:
7jwy_B_1     514:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHA: 613
SecStr          :S        SSEEE EETTEE  EEEEE      TT  EEE TTS EEEEE SSS  EEEEE   EEEEEEEE  TTT    EEEEET  SSSSTTTTTG:    
ExpBur          :eeeeeeeeeeebbebbbbbbeeebebeebeeebeeeebbbeeeeeeeebbbbbeeeebbebeebeeebbbbbbbbeeebeebbbbbeebebeebeebbeb:    

queryA       627:DQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 726
                :**************************************************            **************************************:
7jwy_B_1     614:DQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXSQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 713
SecStr          :GGS TTTGGGTSSS EEEETTEEEES EE S     SEEEETTEEEEEE ------------  EEEEEE            SSEEEEE  EEEEEEEEE:    
ExpBur          :eeeeeebeeebeeeeeeebeebbbbebeeeeeeeeeebebeeebbbbbee------------eeebbbbeeeeeeeeeeeeeeeeeebbeebebebeeeb:    
Contact         :                                                                               b                    

queryA       727:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 826
                :****************************************************************************************************:
7jwy_B_1     714:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 813
SecStr          :EE    EEEE HHHHHTTT HHHHHHHGGG SHHHHHHHHHHHHHHHHHHHHHHHH S  S     SS   TT   TTTS  SSSS    HHHHHHHTTS:    
ExpBur          :bbbbbebbebebeebbbeebeebeebbeeeeeebeebeeebeebbeebeebbeebbbebeeeeeeeeeeebeebebeebbbeeeeeeeebebbeebbeeb:    

queryA       827:TLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 926
                :****************************************************************************************************:
7jwy_B_1     814:TLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 913
SecStr          :   S  SSSSSS   SSSTTSSHHHHHHTTTEEEE  SS HHHHHHHHHHHHHHHHHHTTSTTTSS     HHHHHHHHHHHTT  HHHHHHTHHHHHHH:    
ExpBur          :eeeeebeeeebeebeeeeeeeeebbebeeebbebeeeebeeeebbebbbbbbbbbbebbeebeeeeeeeeebbebbbebbeebebeeebbeeeeeebbee:    

queryA       927:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1026
                :***********************************************************  ***************************************:
7jwy_B_1     914:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1013
SecStr          :HHHHHHHHHHHHHS S S HHHHHHHHHHHHHHHHHHHGGG  TTSS S HHHHHHH  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :beebbeebeeebeeeeeebeebeebbeebeebbeebbeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeeebeebeebbeebb:    

queryA      1027:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1126
                :****************************************************************************************************:
7jwy_B_1    1014:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1113
SecStr          :HHHHHHTSS   STTTTSSSEEEEEEEEEETTEEEEEEEEEEE  EEEEEEES EESSS EEEESSSEEEESSS EEEE SSS   B  BSSSEEE S T:    
ExpBur          :ebbeebbbbbbeeeebbbeeebbbbbbbbbbebbbbbbbbbeeeeeeebeebebbbeeeebbeeeebbbbbeeeebbbbbeebeeeeebbeeebeeeeeb:    
Contact         :                                             b b                                                    

queryA      1127:DVVIGIVNNTVYDPLQPELDS:1147
                :*********************:
7jwy_B_1    1114:DVVIGIVNNTVYDPLQPELDS:1134
SecStr          :TSSTT EE   B SSTTT   :    
ExpBur          :eeeeeeeeeebeeeeeeeeee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123