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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS2) | B 1 (B) | polymer(polypeptide(L)) [1061 aa] | Spike glycoprotein :SPIKE_SARS2 | |
2 | b | L 1 (L) | branched(oligosaccharide) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 706A 1072E 1074N (identity: 100.0 %/94.5 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7jwy_B_1 identity=94.5% |
queryA 27:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 126 :******************************************* ***********************************************: 7jwy_B_1 14:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHXXXXXXXXXXDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 113 SecStr : EEE SS EE SS S EEEEEEEE TT EEEE ---------- EE SS EEEEEE SS EEEEEEES SSSS EEEEEE SS E: ExpBur :eebebbbbbbbeeeeeeeeeeeeebeebbbbbeeebebbeeee----------eeeebebeebbbbbbbeeeeebebbbbbeebeeeeebbbbbeeeeee: queryA 127:VIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 226 :***************** ******************* *****************************************: 7jwy_B_1 114:VIKVCEFQFCNDPFLGVXXXXXXXXXXESEFRVYSSANNCTFEYVSXXXXXXXXXXXXXFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 213 SecStr :EEE EEEEEEEEEE ---------- EEEEEEEES EEE ------------- EEEEEEE TT EEEEEEEE SSS SS EEEEE: ExpBur :ebbbbbbebeeebbbbe----------eeeeebeeeeeeeeeeeee-------------eeebebbbbbeeeeebebbbeeeebeeeeebeeeebbbeee: queryA 227:VDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 326 :************************* **************************************************************: 7jwy_B_1 214:VDLPIGINITRFQTLLALHRSYLTPXXXXXXXXXXXXXYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 313 SecStr :EEE EEEEEEE SS ------------- EEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHHTSS SEEEEEEEEE EE : ExpBur :eebebebebeebbbbbeeeeeeeee-------------bbbbebeebebbbebeeebebeebbbbebebbbbbbbeeeeeebeeeeeebeebebeeeeeb: queryA 327:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 426 :****************************************************************************************************: 7jwy_B_1 314:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 413 SecStr : B B SHHHHT SS SSS EEEEE S B THHHHSS SEEEESSS GGGTTT EEEEEEEEEEEE GGGGGGSSSS STTTTTT : ExpBur :bbbeeeeeebebeebbeeeebebbbebeeeebeebbbebeebeeeeeeeeeebeebeeeebbebbbbebebbbbbbbeebeebbeeeeeeebbbebbebb: queryA 427:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 526 :****************** ********************************************************************************: 7jwy_B_1 414:DDFTGCVIAWNSNNLDSKXXGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 513 SecStr :SS EEEEEEE TTTS -- B EEE SS TT B SSS SS TT B SEEE B TT TTSS EEEEEEEEEESSS EE : ExpBur :eebebbbbbbebbeebee--ebeebebbeebeeebeeeeeeeeeebeeeeeeebeeeeeeebeebbebbebeeeeeeeebbbbbbbbbbeeeeeeeebbb: queryA 527:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHA: 626 :****************************************************************************************************: 7jwy_B_1 514:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHA: 613 SecStr :S SSEEE EETTEE EEEEE TT EEE TTS EEEEE SSS EEEEE EEEEEEEE TTT EEEEET SSSSTTTTTG: ExpBur :eeeeeeeeeeebbebbbbbbeeebebeebeeebeeeebbbeeeeeeeebbbbbeeeebbebeebeeebbbbbbbbeeebeebbbbbeebebeebeebbeb: queryA 627:DQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 726 :************************************************** **************************************: 7jwy_B_1 614:DQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXSQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 713 SecStr :GGS TTTGGGTSSS EEEETTEEEES EE S SEEEETTEEEEEE ------------ EEEEEE SSEEEEE EEEEEEEEE: ExpBur :eeeeeebeeebeeeeeeebeebbbbebeeeeeeeeeebebeeebbbbbee------------eeebbbbeeeeeeeeeeeeeeeeeebbeebebebeeeb: Contact : b queryA 727:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 826 :****************************************************************************************************: 7jwy_B_1 714:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 813 SecStr :EE EEEE HHHHHTTT HHHHHHHGGG SHHHHHHHHHHHHHHHHHHHHHHHH S S SS TT TTTS SSSS HHHHHHHTTS: ExpBur :bbbbbebbebebeebbbeebeebeebbeeeeeebeebeeebeebbeebeebbeebbbebeeeeeeeeeeebeebebeebbbeeeeeeeebebbeebbeeb: queryA 827:TLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 926 :****************************************************************************************************: 7jwy_B_1 814:TLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 913 SecStr : S SSSSSS SSSTTSSHHHHHHTTTEEEE SS HHHHHHHHHHHHHHHHHHTTSTTTSS HHHHHHHHHHHTT HHHHHHTHHHHHHH: ExpBur :eeeeebeeeebeebeeeeeeeeebbebeeebbebeeeebeeeebbebbbbbbbbbbebbeebeeeeeeeeebbebbbebbeebebeeebbeeeeeebbee: queryA 927:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1026 :*********************************************************** ***************************************: 7jwy_B_1 914:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1013 SecStr :HHHHHHHHHHHHHS S S HHHHHHHHHHHHHHHHHHHGGG TTSS S HHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :beebbeebeeebeeeeeebeebeebbeebeebbeebbeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeeebeebeebbeebb: queryA 1027:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1126 :****************************************************************************************************: 7jwy_B_1 1014:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1113 SecStr :HHHHHHTSS STTTTSSSEEEEEEEEEETTEEEEEEEEEEE EEEEEEES EESSS EEEESSSEEEESSS EEEE SSS B BSSSEEE S T: ExpBur :ebbeebbbbbbeeeebbbeeebbbbbbbbbbebbbbbbbbbeeeeeeebeebebbbeeeebbeeeebbbbbeeeebbbbbeebeeeeebbeeebeeeeeb: Contact : b b queryA 1127:DVVIGIVNNTVYDPLQPELDS:1147 :*********************: 7jwy_B_1 1114:DVVIGIVNNTVYDPLQPELDS:1134 SecStr :TSSTT EE B SSTTT : ExpBur :eeeeeeeeeebeeeeeeeeee: |