Protein Model on 7dk7_I_1_B_1 (TEMPLATE: 7dk7 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(SPIKE_SARS2) I 1 (C) polymer(polypeptide(L)) [1060 aa] Spike glycoprotein :SPIKE_SARS2
2 b B 1 (f) polymer(polypeptide(L)) [119 aa] The light chain fragment of 2H2 Fab 449Y 486F 487N 489Y 490F 493Q 494S 498Q (identity: 100.0 %/93.3 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7dk7_I_1 identity=93.3%
queryA        14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113
                :********************************************************        ************************************:
7dk7_I_1      14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHXXXXXXXXRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113
SecStr          :     S        EEE SS   B SSS    SSEEEEEEEE  TT EEE EEEE -------- B    EE SS EEEEEEESS  EEEEEEESSSSTT:    
ExpBur          :eeeebeeeeebeeeebebebbbbbbbeeeeeeeeeeeeeebbbbbebebbebbbee--------ebbbeebebeebbbbbbbbbbebbbbbbbbeebbee:    

queryA       114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213
                :****************************************************************************************************:
7dk7_I_1     114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213
SecStr          :S EEEEEE SS EEEEEE   B SS  EEEE SSSS TT   EE SBS   S  EEEE            SSEEEEEEEEEEEETTEEEEEEEEEEEEES:    
ExpBur          :ebbbbbbbebeeebbebbbbebeebbbbbbeeeeeebeeebeeeebeeeeeeeeeeeebeeeebebeeeeeebeebebbbbbbeebebebbeeeeebebe:    

queryA       214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313
                :**********************************       ***********************************************************:
7dk7_I_1     214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSXXXXXXXSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313
SecStr          :SSS      BEEEEEEE  S   EEEEEEEEEE -------     B EEEE EEE EEEEEEEEB TTS B    BTTS TTTHHHHHHT SS  SEEE:    
ExpBur          :ebbbeeebbbeeeeebebebebeebbbbbbbbee-------eeebebbbbbbbbbebeeeebbbebbeebebeebbbbeeeeebebebeeeeeebeebee:    

queryA       314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413
                :****************************************************************************************************:
7dk7_I_1     314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413
SecStr          :EEEEE    SS         S  TTTTTTT S    SSS EEEEE SS   SHHHHSSS   EEEESSS TTGGGG  BSEEEEEEEEE SGGGGG STT:    
ExpBur          :ebeebeeeeeeebebbbeeeeeeebeeeeeeeebebbbbbeeeebeeebbbebebeeeeebeeeeebebeeeebeeebbbbbbbbbbbbebebbeebbee:    

queryA       414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513
                :****************************************************************************************************:
7dk7_I_1     414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513
SecStr          :   HHHHHT    TT   EEEEEE TTTT  TT     EE S  SS   TT   S  S   SSSS  SSS  SS   SSEE    TTS TTTS EEEEEE:    
ExpBur          :eebebeeebbebbeebebbbbbbebbeebbeeebbeebbbbeebeeebeeeeebeeeeeeeeeeeeeeeeeeeebebebeebebeeeeeebebbbbbbbb:    
Contact         :                                   b                                    bb bb  bb   b               

queryA       514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613
                :****************************************************************************************************:
7dk7_I_1     514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613
SecStr          :EEE  SS   B     S     S  EEEE SS EEEEEEE       TT S  B TTS B  EE SSSS EEEEE    EEEEEEE  TTT    EEEEE:    
ExpBur          :bbbeeeeebbbbbbbeeeeeeeeebbebebbbeeeebbbeeeeeeeeeeeeebeeeeeeebbbebbbeeeebbbeeeeebbbbbbbbbeeebeeebbbee:    

queryA       614:DVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIA: 713
                :*******                    ************************************            *************************:
7dk7_I_1     614:DVNCTEVXXXXXXXXXXXXXXXXXXXXNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXSQSIIAYTMSLGAENSVAYSNNSIA: 713
SecStr          :T  GGG -------------------- EEE SSEEEESSEE SS B  SEEEETTEEEEEE ------------  EEEEEEB           TT EE:    
ExpBur          :ebeeeee--------------------eeeebebbbbeebeebeeeeeeebebeeebbbbeee------------eeebbbbeeeeeeeeeeeeeeeeee:    

queryA       714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813
                :************************************************************************************************** *:
7dk7_I_1     714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKXS: 813
SecStr          :E   EEEEEEEEEEE     EE  HHHHHSSS HHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHTS  SS     S   SSS   TTTS  S  - :    
ExpBur          :bbeebebebeeebbbbbbebeebebeebbbeeeeebeebbeeeeeebeebbeebeebbeebbebbeebbeebeeebeeeeeeebbebebebbbbeeee-e:    

queryA       814:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913
                :**************                          ************************************************************:
7dk7_I_1     814:KRSFIEDLLFNKVTXXXXXXXXXXXXXXXXXXXXXXXXXXKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913
SecStr          :   HHHHHHHHS  --------------------------  SS EE   SS HHHHHHHHHHHHHHHHHTTTHHHHSS     HHHHHHHHHHTTT  T:    
ExpBur          :eebebbebbeeebe--------------------------eeeebeeeeeebeeeebbeebbbbbbbbbebbebbeeeeeeeeebeebbbebbeebebbe:    

queryA       914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013
                :************************************************************************  **************************:
7dk7_I_1     914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLI:1013
SecStr          :HHHHHTHHHHHHHHHHHHHHHHHHHHH SGGGHHHHHHHHHHHHHHHHHHHTTT  TTSS S SHHHHTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :ebbeeeeeebbebbeebbeebeeebeeeeeebeebeebbeebeebbeebeeeeeeeeebeebebeebeeebeeeebeeebeebbebbbebbeebbeebee:    

queryA      1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113
                :****************************************************************************************************:
7dk7_I_1    1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113
SecStr          :HHHHHHHHHHHHHHHHHHTTTS    TTTSSSSEEEEEEEEEETTEEEEEEEEEEE   EEE   S EESSSSEEEESS EEEE SS EEEE SSS   B:    
ExpBur          :ebeebeeebeebbebbeebbbbebeeeebbbeeebbbbbbbbbbebbbbbbbbbeeeeeeebebbebbbeeeebbebeebbbbbeeeebbbbbebbbbee:    

queryA      1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDS:1147
                :**********************************:
7dk7_I_1    1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDS:1147
SecStr          :  BTTTEEE S SSSSTT EE   B THHHHHH :    
ExpBur          :ebbeeebeeeeebeeeeeeeeeebeeeeeeeeee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123