Protein Model on 7dk7_C_1_F_1 (TEMPLATE: 7dk7 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(SPIKE_SARS2) C 1 (A) polymer(polypeptide(L)) [1060 aa] Spike glycoprotein :SPIKE_SARS2
2 b F 1 (b) polymer(polypeptide(L)) [218 aa] The light chain fragment of 2H2 Fab 403R 405D 417K 453Y 455L 456F 475A 486F 487N 489Y 493Q 496G 505Y (identity: 100.0 %/93.3 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7dk7_C_1 identity=93.3%
queryA        14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113
                :********************************************************        ************************************:
7dk7_C_1      14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHXXXXXXXXRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113
SecStr          :      SS      EEE SS S B  SS    SSEEEEEEEE  TT EEEEEEE  -------- B    EE SSEEEEEEEESS  EEEEEEESS STT:    
ExpBur          :eeeebeeeeeeeeeeeebebbbbbbbeeeeeeeeeeebeebbbbbeeebeebbbee--------bbbbeeeebeebbbbbbbbbbbbbbbbbbbeebeee:    

queryA       114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213
                :****************************************************************************************************:
7dk7_C_1     114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213
SecStr          :S EEEEEE SS EEEEEE     SS EEEEE SSSS TT   EEES S   S  EEEE            SSEEEEEEEEEEEETTEEEEEEEEEEEEES:    
ExpBur          :eebbbbebebeeeebebbbbebbebbbbbbeeeeeeeeeebeeebbeeeeeeeeeeeebeeeebebeeeeeebeebbbbbbbbeebebebbeeeeebebe:    

queryA       214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313
                :**********************************       ***********************************************************:
7dk7_C_1     214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSXXXXXXXSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313
SecStr          :SS  S    B EEEEEE      EEEEEE EEE -------    EE  EEEEEEE EEEEEEEEB SSS B     SSS HHHHHHHHHTSS   SEEE:    
ExpBur          :eebeeeebbbeeeeebebebebeebbbbbbbbee-------eeebebeebbbbbbebeeeebbbebbeebebeebbbeeeebbbebebeeeeeebeebee:    

queryA       314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413
                :****************************************************************************************************:
7dk7_C_1     314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413
SecStr          :EEEEE    S EEE      SB TTHHHHT S  B SSS EEEEE SEE  SHHHHTSS  SEEEESSS TTTSTT  BSEEEEEEEEE SGGGGTSSTT:    
ExpBur          :ebeeeeeeeeeebebbeeeeeebebeebeeeeebebbbebeeeebeebebebeebeeeeebeebebeeeebeebbeeebbebbbbbbbbebebeeebbee:    
Contact         :                                                                                         b b        

queryA       414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513
                :****************************************************************************************************:
7dk7_C_1     414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513
SecStr          :   HHHHTT    TT  SEEEEEE TTTT  TT B   EEE   SS   TT          SSSS  SSS  SS   SEEE  B TTS TTSS EEEEEE:    
ExpBur          :eebebbeebbebbeebebbbbbbebbeebbeeebbeebebbeeeeeebeeeeebeeeeeeeeeeeeeeeeeeeebeebbeebebeeeeeebebbbbbbbb:    
Contact         :   b                                   b bb                  b          bb b   b  b        b        

queryA       514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613
                :****************************************************************************************************:
7dk7_C_1     514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613
SecStr          :EEE  SS   EE          SSS EEE SS EEE EEEE S    TT  EEE TTS EEEEE SSS  EEEEE  S EEEEEEE  TTT    EEEEE:    
ExpBur          :bbeeeeeeeebeebeeeeeeeeeebbbbebeeeeeebbbeeeeeeeeeeeeeeeeeeeebebbbbbeeeebbbeeebbebbbbbbbbbeeebeeebebee:    

queryA       614:DVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIA: 713
                :*******                    ************************************            *************************:
7dk7_C_1     614:DVNCTEVXXXXXXXXXXXXXXXXXXXXNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXSQSIIAYTMSLGAENSVAYSNNSIA: 713
SecStr          :T  SS  --------------------  EE SSEEEES EE SS B   EEEETTEEEEEE ------------  EEEEEEB           SSEEE:    
ExpBur          :ebeeeee--------------------eeeebeebbbeebeeeeeeeeeebebeeebbbbbee------------eeebbbbeeeeeeeeeeeeeeeeee:    

queryA       714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813
                :************************************************************************************************** *:
7dk7_C_1     714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKXS: 813
SecStr          :EEEEEEEEEEEEEEE     EEE HHHHH SS HHHHHHHTTT HHHHHHHHHHHHHHHHHHHHHHHHH   SS     S   SSS   TTTS  S  - :    
ExpBur          :bbeebebebeeebbbbbbebbbbebeebbbeebeebeebbeeeeeebeebeeebeebbeebbebbeebbeebeeeeeeeeeeebeebebebbeebeee-e:    

queryA       814:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913
                :**************                          ************************************************************:
7dk7_C_1     814:KRSFIEDLLFNKVTXXXXXXXXXXXXXXXXXXXXXXXXXXKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913
SecStr          :   HHHHHHHHS  --------------------------  SSEEE   SS HHHHHHHHHHHHHHHHHTTTHHHHSS     HHHHHHHHHHTTT  T:    
ExpBur          :ebbebbbbbbeebe--------------------------eeebeeeeeeebeeeebbeebebbbbbbbebbebbeeeeeeeeebeebbbebbeebbbbe:    

queryA       914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013
                :************************************************************************  **************************:
7dk7_C_1     914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLI:1013
SecStr          :HHHHHTHHHHHHHHHHHHHHHHHHHTT GGGGHHHHHHHHHHHHHHHHHHHGGG  TTSS S HHHHHHHS TTTHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :ebbeeeeeebbeebeebbeebeeebeeeeeebeebeebeeebeeebeebeeeeeeeeebeebebeebeeebeeeebeebbbebbebbbebbeebbeebee:    

queryA      1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113
                :****************************************************************************************************:
7dk7_C_1    1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113
SecStr          :HHHHHHHHHHHHHHHHHHTTSS    TTTSSSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEES EESSSEEEEESSSEEEE SSSEEEE SS    B:    
ExpBur          :ebeebeebbeebbebbeebbbbebeeeebbeeeebbbbbbbbbbebbbbbbbbbeeeeeeebebbebbbeeeebbeeeebebbbeeeeeebbeebbbbee:    

queryA      1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDS:1147
                :**********************************:
7dk7_C_1    1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDS:1147
SecStr          :  BTTTEEEEEETTT SS      B THHHHH  :    
ExpBur          :ebbeeebeeeeebeeeeeeeeeebeeeeeeeeee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123