CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS2) | C 1 (A) | polymer(polypeptide(L)) [1060 aa] | Spike glycoprotein :SPIKE_SARS2 | |
2 | b | F 1 (b) | polymer(polypeptide(L)) [218 aa] | The light chain fragment of 2H2 Fab | 403R 405D 417K 453Y 455L 456F 475A 486F 487N 489Y 493Q 496G 505Y (identity: 100.0 %/93.3 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7dk7_C_1 identity=93.3% |
queryA 14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113 :******************************************************** ************************************: 7dk7_C_1 14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHXXXXXXXXRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113 SecStr : SS EEE SS S B SS SSEEEEEEEE TT EEEEEEE -------- B EE SSEEEEEEEESS EEEEEEESS STT: ExpBur :eeeebeeeeeeeeeeeebebbbbbbbeeeeeeeeeeebeebbbbbeeebeebbbee--------bbbbeeeebeebbbbbbbbbbbbbbbbbbbeebeee: queryA 114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213 :****************************************************************************************************: 7dk7_C_1 114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213 SecStr :S EEEEEE SS EEEEEE SS EEEEE SSSS TT EEES S S EEEE SSEEEEEEEEEEEETTEEEEEEEEEEEEES: ExpBur :eebbbbebebeeeebebbbbebbebbbbbbeeeeeeeeeebeeebbeeeeeeeeeeeebeeeebebeeeeeebeebbbbbbbbeebebebbeeeeebebe: queryA 214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313 :********************************** ***********************************************************: 7dk7_C_1 214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSXXXXXXXSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313 SecStr :SS S B EEEEEE EEEEEE EEE ------- EE EEEEEEE EEEEEEEEB SSS B SSS HHHHHHHHHTSS SEEE: ExpBur :eebeeeebbbeeeeebebebebeebbbbbbbbee-------eeebebeebbbbbbebeeeebbbebbeebebeebbbeeeebbbebebeeeeeebeebee: queryA 314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413 :****************************************************************************************************: 7dk7_C_1 314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413 SecStr :EEEEE S EEE SB TTHHHHT S B SSS EEEEE SEE SHHHHTSS SEEEESSS TTTSTT BSEEEEEEEEE SGGGGTSSTT: ExpBur :ebeeeeeeeeeebebbeeeeeebebeebeeeeebebbbebeeeebeebebebeebeeeeebeebebeeeebeebbeeebbebbbbbbbbebebeeebbee: Contact : b b queryA 414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513 :****************************************************************************************************: 7dk7_C_1 414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513 SecStr : HHHHTT TT SEEEEEE TTTT TT B EEE SS TT SSSS SSS SS SEEE B TTS TTSS EEEEEE: ExpBur :eebebbeebbebbeebebbbbbbebbeebbeeebbeebebbeeeeeebeeeeebeeeeeeeeeeeeeeeeeeeebeebbeebebeeeeeebebbbbbbbb: Contact : b b bb b bb b b b b queryA 514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613 :****************************************************************************************************: 7dk7_C_1 514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613 SecStr :EEE SS EE SSS EEE SS EEE EEEE S TT EEE TTS EEEEE SSS EEEEE S EEEEEEE TTT EEEEE: ExpBur :bbeeeeeeeebeebeeeeeeeeeebbbbebeeeeeebbbeeeeeeeeeeeeeeeeeeeebebbbbbeeeebbbeeebbebbbbbbbbbeeebeeebebee: queryA 614:DVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIA: 713 :******* ************************************ *************************: 7dk7_C_1 614:DVNCTEVXXXXXXXXXXXXXXXXXXXXNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXSQSIIAYTMSLGAENSVAYSNNSIA: 713 SecStr :T SS -------------------- EE SSEEEES EE SS B EEEETTEEEEEE ------------ EEEEEEB SSEEE: ExpBur :ebeeeee--------------------eeeebeebbbeebeeeeeeeeeebebeeebbbbbee------------eeebbbbeeeeeeeeeeeeeeeeee: queryA 714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813 :************************************************************************************************** *: 7dk7_C_1 714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKXS: 813 SecStr :EEEEEEEEEEEEEEE EEE HHHHH SS HHHHHHHTTT HHHHHHHHHHHHHHHHHHHHHHHHH SS S SSS TTTS S - : ExpBur :bbeebebebeeebbbbbbebbbbebeebbbeebeebeebbeeeeeebeebeeebeebbeebbebbeebbeebeeeeeeeeeeebeebebebbeebeee-e: queryA 814:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913 :************** ************************************************************: 7dk7_C_1 814:KRSFIEDLLFNKVTXXXXXXXXXXXXXXXXXXXXXXXXXXKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913 SecStr : HHHHHHHHS -------------------------- SSEEE SS HHHHHHHHHHHHHHHHHTTTHHHHSS HHHHHHHHHHTTT T: ExpBur :ebbebbbbbbeebe--------------------------eeebeeeeeeebeeeebbeebebbbbbbbebbebbeeeeeeeeebeebbbebbeebbbbe: queryA 914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013 :************************************************************************ **************************: 7dk7_C_1 914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLI:1013 SecStr :HHHHHTHHHHHHHHHHHHHHHHHHHTT GGGGHHHHHHHHHHHHHHHHHHHGGG TTSS S HHHHHHHS TTTHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :ebbeeeeeebbeebeebbeebeeebeeeeeebeebeebeeebeeebeebeeeeeeeeebeebebeebeeebeeeebeebbbebbebbbebbeebbeebee: queryA 1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113 :****************************************************************************************************: 7dk7_C_1 1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113 SecStr :HHHHHHHHHHHHHHHHHHTTSS TTTSSSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEES EESSSEEEEESSSEEEE SSSEEEE SS B: ExpBur :ebeebeebbeebbebbeebbbbebeeeebbeeeebbbbbbbbbbebbbbbbbbbeeeeeeebebbebbbeeeebbeeeebebbbeeeeeebbeebbbbee: queryA 1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDS:1147 :**********************************: 7dk7_C_1 1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDS:1147 SecStr : BTTTEEEEEETTT SS B THHHHH : ExpBur :ebbeeebeeeeebeeeeeeeeeebeeeeeeeeee: |