Protein Model on 7dk3_C_1_SK_1 (TEMPLATE: 7dk3 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(SPIKE_SARS2) C 1 (C) polymer(polypeptide(L)) [1048 aa] Spike glycoprotein :SPIKE_SARS2
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7dk3_C_1 identity=92.2%
queryA        14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113
                :********************************************************       *************************************:
7dk3_C_1      14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHXXXXXXXKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113
SecStr          :     SS       EEE SSTT B  SS    S EEEEEEEE  TT EEEEEEE  -------  B    EE TTEEEEEEEESS    EEEEESSSSTT:    
ExpBur          :eeeebeeeeebeeeeeebebbbbbbbeeeeeeeeeeebeebbbbbebebbebbbee-------eebbbeebebeebbbbbbbbbbbbbbbbbbbeebeee:    

queryA       114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213
                :****************************************************************************************************:
7dk3_C_1     114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213
SecStr          :S EEEEEE SSSEEEEEEEE   SS  B     SSS       B S S EEEEEEEEE            SS  EEEEEEEEEETTEEEEEEEEE    S:    
ExpBur          :bebbbbbbebebebbebbbbebbebbbbbbeebeeeeebebeeebbebeeeeeeeeeebeeeebebeeeeeeeebbebbbbbbeeeebebbbeeeeeebe:    

queryA       214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313
                :**********************************       ***********************************************************:
7dk3_C_1     214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSXXXXXXXSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313
SecStr          :SS       BEEEEEE   S   EEEE   EE  ------- TT EE  EEEEEEE EEEEEEEEE TTS EEE  BTTS HHHHHHHHHTSSS  SEEE:    
ExpBur          :eebeeeebbbeeeeebebebebeebbbbbbbeee-------eeebebbebbbbbbebeeeebbbebeeebebeebbbbeeeebbebbbeeeeeebeebee:    

queryA       314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413
                :****************************************************************************************************:
7dk3_C_1     314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413
SecStr          :EEEEEE    SEEEE   S  B SSHHHHT SS   STT EEEEE SSB   HHHHHH   SEEEESSS HHHHHT EESEEEEEEEEEEHHHHTT SBT:    
ExpBur          :ebeebeeeeeeebbbbeeeeeebebeebbeeeebebbeebeeeebeebbbbbeebeeeeeeeeeeeeebebeebbeeebbbbbbbbbbbbeebbebbbee:    

queryA       414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513
                :************************************************************              **************************:
7dk3_C_1     414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYXXXXXXXXXXXXXXCYFPLQSYGFQPTNGVGYQPYRVVVL: 513
SecStr          :  SHHHHHT  B TT   EEEE B HHHH  TT BTT EEE   SS   TT         --------------   SEEE  B TT  GGGSEEEEEEE:    
ExpBur          :eeeebbbebbebeeebebbbbbeebbeebbeeebbeebebbeeeeeebeeeeebeeeeee--------------eeebbeebebeeebeeeebbbbbbbb:    

queryA       514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613
                :****************************************************************************************************:
7dk3_C_1     514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613
SecStr          :EEE  SS   EE          SSEEEEEETTEEEEEEEEE S    TT  B   TTS   EEE SSS  EEEEE   EEEEEEEE  TTT    EEEEE:    
ExpBur          :bbeeeeeeeebebbeeeeeebeeebbebebeeeeeebbbeebeeebeeeeeebeeeeeeebbbbbeeeeebbebeebeebbbbbbbbbbeebeebbbbbe:    

queryA       614:DVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIA: 713
                :*******                    ************************************            *************************:
7dk3_C_1     614:DVNCTEVXXXXXXXXXXXXXXXXXXXXNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXSQSIIAYTMSLGAENSVAYSNNSIA: 713
SecStr          :TS S   -------------------- EEE SSEEEESSEE  S B  SEEEETTEEEEEE ------------  EEEEEEB           TTEEE:    
ExpBur          :ebeeeee--------------------eeeebebbbbeebeebeeeeeeebebeeebbbbbee------------eeebbbbeeeeeeeeeeeeeeeeee:    

queryA       714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813
                :****************************************************************************************************:
7dk3_C_1     714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813
SecStr          :EEEEEEEEEEEEEEE     EEE HHHHHSSS HHHHHHHHHH THHHHHHHHHHHHHHHHHHHHHHHT   SS     S   SSS   TTTSEETTSSS:    
ExpBur          :bbeebebebeeebbbbbbebbebebeebbbeebeebeebbeeeeeebeebeeebeebbeebbebbeebbeeeeeeeeeeeeeebeebebebbbeeeebee:    

queryA       814:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913
                :**************                          ************************************************************:
7dk3_C_1     814:KRSFIEDLLFNKVTXXXXXXXXXXXXXXXXXXXXXXXXXXKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913
SecStr          : EEHHHHHHHHS  --------------------------  SSEEE   SS HHHHHHHHHHHHHHHHHTTTHHHHSS     HHHHHHHHHHTTT  T:    
ExpBur          :ebbebbbbbbeebe--------------------------eeebbeeeeeebeeeebbeebbbbbbbbbebbebbeeeeeeeeebbebbbebbeebebee:    

queryA       914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013
                :************************************************************************  **************************:
7dk3_C_1     914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLI:1013
SecStr          :HHHHHHHHHHHHHHHHHHHHHHHHHHH S TTHHHHHHHHHHHHHHHHHHHGGG  TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :ebbeeeeeebbebbeebbeebeeebeeeeeebeebeebeeebeebeeebeeebeeeeebebbebeebeeeeeeeebeebbeebbebbbebbeebbeebee:    

queryA      1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113
                :****************************************************************************************************:
7dk3_C_1    1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113
SecStr          :HHHHHHHHHHHHHHHHHHTTTS   STTTSSSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEE S EESSSSEEEESSSEEEESSSSEEEE TTS   E:    
ExpBur          :ebeebeebbeebbebbeebbbbbbeeeebbbebebbbbbbbbbbebbbbbbbbbeeeeeeebebbebbbeeeebbeeeebbbbbeeeebbbbbebbeeee:    

queryA      1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDS:1147
                :**********************************:
7dk3_C_1    1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDS:1147
SecStr          :E BTTTEEE S TTTSTT EE   B TTTGGGG :    
ExpBur          :ebbeeebeeeeebeeeeeeeebebeebeeeeeee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123