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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS2) | C 1 (C) | polymer(polypeptide(L)) [1048 aa] | Spike glycoprotein :SPIKE_SARS2 |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7dk3_C_1 identity=92.2% |
queryA 14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113 :******************************************************** *************************************: 7dk3_C_1 14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHXXXXXXXKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113 SecStr : SS EEE SSTT B SS S EEEEEEEE TT EEEEEEE ------- B EE TTEEEEEEEESS EEEEESSSSTT: ExpBur :eeeebeeeeebeeeeeebebbbbbbbeeeeeeeeeeebeebbbbbebebbebbbee-------eebbbeebebeebbbbbbbbbbbbbbbbbbbeebeee: queryA 114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213 :****************************************************************************************************: 7dk3_C_1 114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213 SecStr :S EEEEEE SSSEEEEEEEE SS B SSS B S S EEEEEEEEE SS EEEEEEEEEETTEEEEEEEEE S: ExpBur :bebbbbbbebebebbebbbbebbebbbbbbeebeeeeebebeeebbebeeeeeeeeeebeeeebebeeeeeeeebbebbbbbbeeeebebbbeeeeeebe: queryA 214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313 :********************************** ***********************************************************: 7dk3_C_1 214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSXXXXXXXSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313 SecStr :SS BEEEEEE S EEEE EE ------- TT EE EEEEEEE EEEEEEEEE TTS EEE BTTS HHHHHHHHHTSSS SEEE: ExpBur :eebeeeebbbeeeeebebebebeebbbbbbbeee-------eeebebbebbbbbbebeeeebbbebeeebebeebbbbeeeebbebbbeeeeeebeebee: queryA 314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413 :****************************************************************************************************: 7dk3_C_1 314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413 SecStr :EEEEEE SEEEE S B SSHHHHT SS STT EEEEE SSB HHHHHH SEEEESSS HHHHHT EESEEEEEEEEEEHHHHTT SBT: ExpBur :ebeebeeeeeeebbbbeeeeeebebeebbeeeebebbeebeeeebeebbbbbeebeeeeeeeeeeeeebebeebbeeebbbbbbbbbbbbeebbebbbee: queryA 414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513 :************************************************************ **************************: 7dk3_C_1 414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYXXXXXXXXXXXXXXCYFPLQSYGFQPTNGVGYQPYRVVVL: 513 SecStr : SHHHHHT B TT EEEE B HHHH TT BTT EEE SS TT -------------- SEEE B TT GGGSEEEEEEE: ExpBur :eeeebbbebbebeeebebbbbbeebbeebbeeebbeebebbeeeeeebeeeeebeeeeee--------------eeebbeebebeeebeeeebbbbbbbb: queryA 514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613 :****************************************************************************************************: 7dk3_C_1 514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613 SecStr :EEE SS EE SSEEEEEETTEEEEEEEEE S TT B TTS EEE SSS EEEEE EEEEEEEE TTT EEEEE: ExpBur :bbeeeeeeeebebbeeeeeebeeebbebebeeeeeebbbeebeeebeeeeeebeeeeeeebbbbbeeeeebbebeebeebbbbbbbbbbeebeebbbbbe: queryA 614:DVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIA: 713 :******* ************************************ *************************: 7dk3_C_1 614:DVNCTEVXXXXXXXXXXXXXXXXXXXXNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXSQSIIAYTMSLGAENSVAYSNNSIA: 713 SecStr :TS S -------------------- EEE SSEEEESSEE S B SEEEETTEEEEEE ------------ EEEEEEB TTEEE: ExpBur :ebeeeee--------------------eeeebebbbbeebeebeeeeeeebebeeebbbbbee------------eeebbbbeeeeeeeeeeeeeeeeee: queryA 714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813 :****************************************************************************************************: 7dk3_C_1 714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813 SecStr :EEEEEEEEEEEEEEE EEE HHHHHSSS HHHHHHHHHH THHHHHHHHHHHHHHHHHHHHHHHT SS S SSS TTTSEETTSSS: ExpBur :bbeebebebeeebbbbbbebbebebeebbbeebeebeebbeeeeeebeebeeebeebbeebbebbeebbeeeeeeeeeeeeeebeebebebbbeeeebee: queryA 814:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913 :************** ************************************************************: 7dk3_C_1 814:KRSFIEDLLFNKVTXXXXXXXXXXXXXXXXXXXXXXXXXXKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913 SecStr : EEHHHHHHHHS -------------------------- SSEEE SS HHHHHHHHHHHHHHHHHTTTHHHHSS HHHHHHHHHHTTT T: ExpBur :ebbebbbbbbeebe--------------------------eeebbeeeeeebeeeebbeebbbbbbbbbebbebbeeeeeeeeebbebbbebbeebebee: queryA 914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013 :************************************************************************ **************************: 7dk3_C_1 914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLI:1013 SecStr :HHHHHHHHHHHHHHHHHHHHHHHHHHH S TTHHHHHHHHHHHHHHHHHHHGGG TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :ebbeeeeeebbebbeebbeebeeebeeeeeebeebeebeeebeebeeebeeebeeeeebebbebeebeeeeeeeebeebbeebbebbbebbeebbeebee: queryA 1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113 :****************************************************************************************************: 7dk3_C_1 1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113 SecStr :HHHHHHHHHHHHHHHHHHTTTS STTTSSSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEE S EESSSSEEEESSSEEEESSSSEEEE TTS E: ExpBur :ebeebeebbeebbebbeebbbbbbeeeebbbebebbbbbbbbbbebbbbbbbbbeeeeeeebebbebbbeeeebbeeeebbbbbeeeebbbbbebbeeee: queryA 1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDS:1147 :**********************************: 7dk3_C_1 1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDS:1147 SecStr :E BTTTEEE S TTTSTT EE B TTTGGGG : ExpBur :ebbeeebeeeeebeeeeeeeebebeebeeeeeee: |