Protein Model on 7dk3_A_1_PM_1 (TEMPLATE: 7dk3 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(SPIKE_SARS2) A 1 (A) polymer(polypeptide(L)) [1062 aa] Spike glycoprotein :SPIKE_SARS2
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7dk3_A_1 identity=93.5%
queryA        14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113
                :********************************************************       *************************************:
7dk3_A_1      14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHXXXXXXXKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113
SecStr          :     SS       EEE SSTT B  SS    S EEEEEEEE  TT EEEEEEE  -------  B    EE SSEEEEEEEESS  EEEEEEESSSSTT:    
ExpBur          :eeeebeeeeebeeeebebebbbbbbbeeeeeeeeeeeeeebbbbbebebbebbbee-------eebbbeebebeebbbbbbbbbbbbbbbbbbbeebebe:    

queryA       114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213
                :****************************************************************************************************:
7dk3_A_1     114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213
SecStr          :S EEEEEE SSSEEEEEEEE   SS  EEEE  SSS    EEEE S S EEEEEEEEE            SS SEEEEEEEEEETTEEEEEEEE     S:    
ExpBur          :eebbbbbbebebebbebbebeebebbbbbbeebeeeeeeeeeeeebeeeeeeeeeeeebeeeebebeeeeeeeebbebbbbbbeeeebebbbeeeeeebe:    

queryA       214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313
                :**********************************       ***********************************************************:
7dk3_A_1     214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSXXXXXXXSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313
SecStr          :SS  S    BEEEEEE       EEEEEEEEEE -------  S B  SEEEEEEE EEEEEEEEE TTSSEEEEEESSSSHHHHHHHHTTSS   SEEE:    
ExpBur          :eebbeeebbbeeeeebebebebeebbbbbebbee-------eeebbbbebbbbbbebeeeebbbebeeebebeebbbbeeeebbebebeeeeeebeebee:    

queryA       314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413
                :****************************************************************************************************:
7dk3_A_1     314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413
SecStr          :EEEE     S EEEE      B  STTTTS SS  BSSS EEEEE SSB  THHHHHS   SEEEESSS TTHHHHS  SEEEEEEEEE GGGGGG STT:    
ExpBur          :ebeebeeeeeeebbbbeeeeeebebeebbeeeebbbbbebeeeebeebbbebeebeeeeebeeeebeebeeeebeeebbbebebbbbbbbbebbeebbee:    

queryA       414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513
                :****************************************************************************************************:
7dk3_A_1     414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513
SecStr          :  SHHHHTT    TT  EEEEEEE TTTT  TT  TT EEE   SS   TT        EE SSS  TTS BTTEE SEEE    TTS TTTS EEEEEE:    
ExpBur          :eeeebbbebbebeeebebbbbbbebbeebbeeebbeebebbeebeeebeebeeeeeeebeeeeeeebeeeeeeebeebbeebebeeeeeeeebbbbbbbb:    

queryA       514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613
                :****************************************************************************************************:
7dk3_A_1     514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613
SecStr          :EEE SSS      S        SSEEEEEETTEEEEEEEEE      TT   EE TTSSEEEEE SSS  EEEEE S  SEEEEEE  TTT    EEEEE:    
ExpBur          :bbeeeeeebebbbeeeeeeebeeebbebbbbbbeeebebeebeeebeeeeeeeeeeeeeeebbbbeeeeebbebeebeeebbbbbbbbeeebeebbbbbe:    

queryA       614:DVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIA: 713
                :*******                    ************************************            *************************:
7dk3_A_1     614:DVNCTEVXXXXXXXXXXXXXXXXXXXXNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXSQSIIAYTMSLGAENSVAYSNNSIA: 713
SecStr          :TS S   -------------------- EEE SSEEEESSEE SS B  SEEEETTEEEEEE ------------  EEEEEEB           TTEEE:    
ExpBur          :eeeeeee--------------------eeeebebbbbebbeebeeeeeeebebeeebbbbbee------------eeebbbbeeeeeeeeeeeeeeeeee:    

queryA       714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813
                :****************************************************************************************************:
7dk3_A_1     714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813
SecStr          :EES EEEEEEEEEEE    EEEE HHHHHSSS HHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHH   SS     SS   TT   TTTSB TTSSS:    
ExpBur          :bbeebebebeebbbbbbbbbbebebeebbbeebeebeebbeeeeeebeebeeebeebbebbbebbeebbeebeeebeeeeeeebbebebeebbeeeeeee:    

queryA       814:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913
                :**************                          ************************************************************:
7dk3_A_1     814:KRSFIEDLLFNKVTXXXXXXXXXXXXXXXXXXXXXXXXXXKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913
SecStr          :  BHHHHHHHHH  --------------------------  SSEEEE  SS HHHHHHHHHHHHHHHHHTTTHHHHSS     HHHHHHHHHHTTT  T:    
ExpBur          :ebbebbebbeeebe--------------------------eeebbeeeeeebeeeebbeebebbbbbbbebbebbeeeeeeebebeebbbebbeebebbe:    

queryA       914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013
                :************************************************************************  **************************:
7dk3_A_1     914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLI:1013
SecStr          :HHHHHHHHHHHHHHHHHHHHHHHHHHH SGGGHHHHHHHHHHHHHHHHHHHGGG  TTSS S HHHHHTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :ebbeeeeeebbebbeebbbebeeebeeeeeebbebeebeeebeebeeebeeebeeeeebebbebeebeeeeeeeebeebbeebbebbbebbeebbeebee:    

queryA      1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113
                :****************************************************************************************************:
7dk3_A_1    1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113
SecStr          :HHHHHHHHHHHHHHHHHHTTTS   STTTSSSSEEEEEEEEEETTEEEEEEEEEEE  EEEEEEES EESSSSEEEESSSEEEESSSSEEEE SSS   E:    
ExpBur          :ebeebeebbeebbebbeebbbeebeeeebbbeeebbbbbbbbbbebbbbbbbbbeeeeeeebebbebbbeeeebbeeeebbbbbeeeebbbbbebbbeee:    

queryA      1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDS:1147
                :**********************************:
7dk3_A_1    1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDS:1147
SecStr          :E BTTTEEE S TTTSTT EE   B THHHHHH :    
ExpBur          :ebbeeebeeeeebeebeebeebebeeeeeeeeee:

Input Residue Numbers for Focused Sites

ex) 2,15,123