Protein Model on 7dk3_A_1_C_1
(TEMPLATE: 
7dk3
)Protein Model on 7dk3_A_1_C_1
(TEMPLATE: 7dk3
)| CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(SPIKE_SARS2) | A 1 (A) | polymer(polypeptide(L)) [1062 aa] | Spike glycoprotein :SPIKE_SARS2 | |
| 2 | b | C 1 (C) | polymer(polypeptide(L)) [1048 aa] | Spike glycoprotein :SPIKE_SARS2 | 38Y 41K 42V 43F 44R 47V 168F 199G 200Y 224E 225P 230P 282N 413G 737D 740M 745D 755Q 756Y 757G 758S 759F 762Q 765R 768T 786K 787Q 788I 789Y 790K 792P 796D 854K 855F 856N 857G 859T 861L 863P 864L 865L 866T 869M 872Q 873Y 882I 883T 884S 886W 889G 890A 891G 892A 894L 895Q 896I 897P 898F 900M 904Y 913Q 914N 917Y 918E 920Q 963V 1001L 1002Q 1005Q 1009T 1012L 1013I 1019R 1027T 1030S 1031E 1034L 1036Q 1039R 1113Q 1141L 1144E (identity: 100.0 %/93.5 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:7dk3_A_1 identity=93.5% |
queryA 14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113
:******************************************************** *************************************:
7dk3_A_1 14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHXXXXXXXKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113
SecStr : SS EEE SSTT B SS S EEEEEEEE TT EEEEEEE ------- B EE SSEEEEEEEESS EEEEEEESSSSTT:
ExpBur :eeeebeeeeebeeeebebebbbbbbbeeeeeeeeeeeeeebbbbbebebbebbbee-------eebbbeebebeebbbbbbbbbbbbbbbbbbbeebebe:
Contact : b bbbb b
queryA 114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213
:****************************************************************************************************:
7dk3_A_1 114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213
SecStr :S EEEEEE SSSEEEEEEEE SS EEEE SSS EEEE S S EEEEEEEEE SS SEEEEEEEEEETTEEEEEEEE S:
ExpBur :eebbbbbbebebebbebbebeebebbbbbbeebeeeeeeeeeeeebeeeeeeeeeeeebeeeebebeeeeeeeebbebbbbbbeeeebebbbeeeeeebe:
Contact : b bb
queryA 214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313
:********************************** ***********************************************************:
7dk3_A_1 214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSXXXXXXXSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313
SecStr :SS S BEEEEEE EEEEEEEEEE ------- S B SEEEEEEE EEEEEEEEE TTSSEEEEEESSSSHHHHHHHHTTSS SEEE:
ExpBur :eebbeeebbbeeeeebebebebeebbbbbebbee-------eeebbbbebbbbbbebeeeebbbebeeebebeebbbbeeeebbebebeeeeeebeebee:
Contact : bb b b
queryA 314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413
:****************************************************************************************************:
7dk3_A_1 314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413
SecStr :EEEE S EEEE B STTTTS SS BSSS EEEEE SSB THHHHHS SEEEESSS TTHHHHS SEEEEEEEEE GGGGGG STT:
ExpBur :ebeebeeeeeeebbbbeeeeeebebeebbeeeebbbbbebeeeebeebbbebeebeeeeebeeeebeebeeeebeeebbbebebbbbbbbbebbeebbee:
Contact : b
queryA 414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513
:****************************************************************************************************:
7dk3_A_1 414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513
SecStr : SHHHHTT TT EEEEEEE TTTT TT TT EEE SS TT EE SSS TTS BTTEE SEEE TTS TTTS EEEEEE:
ExpBur :eeeebbbebbebeeebebbbbbbebbeebbeeebbeebebbeebeeebeebeeeeeeebeeeeeeebeeeeeeebeebbeebebeeeeeeeebbbbbbbb:
queryA 514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613
:****************************************************************************************************:
7dk3_A_1 514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613
SecStr :EEE SSS S SSEEEEEETTEEEEEEEEE TT EE TTSSEEEEE SSS EEEEE S SEEEEEE TTT EEEEE:
ExpBur :bbeeeeeebebbbeeeeeeebeeebbebbbbbbeeebebeebeeebeeeeeeeeeeeeeeebbbbeeeeebbebeebeeebbbbbbbbeeebeebbbbbe:
queryA 614:DVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIA: 713
:******* ************************************ *************************:
7dk3_A_1 614:DVNCTEVXXXXXXXXXXXXXXXXXXXXNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXSQSIIAYTMSLGAENSVAYSNNSIA: 713
SecStr :TS S -------------------- EEE SSEEEESSEE SS B SEEEETTEEEEEE ------------ EEEEEEB TTEEE:
ExpBur :eeeeeee--------------------eeeebebbbbebbeebeeeeeeebebeeebbbbbee------------eeebbbbeeeeeeeeeeeeeeeeee:
queryA 714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813
:****************************************************************************************************:
7dk3_A_1 714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813
SecStr :EES EEEEEEEEEEE EEEE HHHHHSSS HHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHH SS SS TT TTTSB TTSSS:
ExpBur :bbeebebebeebbbbbbbbbbebebeebbbeebeebeebbeeeeeebeebeeebeebbebbbebbeebbeebeeebeeeeeeebbebebeebbeeeeeee:
Contact : b b b bbbbb b b b bbbbb b b
queryA 814:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913
:************** ************************************************************:
7dk3_A_1 814:KRSFIEDLLFNKVTXXXXXXXXXXXXXXXXXXXXXXXXXXKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913
SecStr : BHHHHHHHHH -------------------------- SSEEEE SS HHHHHHHHHHHHHHHHHTTTHHHHSS HHHHHHHHHHTTT T:
ExpBur :ebbebbebbeeebe--------------------------eeebbeeeeeebeeeebbeebebbbbbbbebbebbeeeeeeebebeebbbebbeebebbe:
Contact : bbbb b b bbbb b bb bbb b bbbb bbbbb b b b
queryA 914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013
:************************************************************************ **************************:
7dk3_A_1 914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLI:1013
SecStr :HHHHHHHHHHHHHHHHHHHHHHHHHHH SGGGHHHHHHHHHHHHHHHHHHHGGG TTSS S HHHHHTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHH:
ExpBur :ebbeeeeeebbebbeebbbebeeebeeeeeebbebeebeeebeebeeebeeebeeeeebebbebeebeeeeeeeebeebbeebbebbbebbeebbeebee:
Contact :b bb b b bb b b bb
queryA 1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113
:****************************************************************************************************:
7dk3_A_1 1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113
SecStr :HHHHHHHHHHHHHHHHHHTTTS STTTSSSSEEEEEEEEEETTEEEEEEEEEEE EEEEEEES EESSSSEEEESSSEEEESSSSEEEE SSS E:
ExpBur :ebeebeebbeebbebbeebbbeebeeeebbbeeebbbbbbbbbbebbbbbbbbbeeeeeeebebbebbbeeeebbeeeebbbbbeeeebbbbbebbbeee:
Contact : b b bb b b b b
queryA 1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDS:1147
:**********************************:
7dk3_A_1 1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDS:1147
SecStr :E BTTTEEE S TTTSTT EE B THHHHHH :
ExpBur :ebbeeebeeeeebeebeebeebebeeeeeeeeee:
Contact : b b
|
[assembly_id:1]
[help]