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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS2) | B 1 (D) | polymer(polypeptide(L)) [1059 aa] | Spike glycoprotein :SPIKE_SARS2 | |
2 | b | D 1 (H) | polymer(polypeptide(L)) [213 aa] | The light chain of 3C1 fab | 478T 479P 480C 481N 483V 486F 487N (identity: 100.0 %/93.2 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7dd2_B_1 identity=93.2% |
queryA 14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113 :******************************************************** *************************************: 7dd2_B_1 14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHXXXXXXXKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113 SecStr : S EEE SS S SS EEEEEEEE TT EEE B ------- B EE TT EEEEEEESSS EEEEEEESSSSSS: ExpBur :eeeebeeeeeeeeeebebebbbbbeeeeeeeeeebeebeeebbbbebebbebebee-------ebbbbeebebeebbbbbbbbbbebbbbbbbbeebeee: queryA 114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213 :****************************************************************************************************: 7dd2_B_1 114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213 SecStr :S EEEEEE SS EEEEEE SS EEEEETSSS TT EEES S S EEE S SS EEEEEEE EETTEE EE EEE S: ExpBur :eebbbbbeebeeeebebbebebeebbbbbbeebeeebeeebebeebeeeeeeeeeeeeeeeeebebeeeeeebeebebbbbbeeebebebbbeeeeeebe: queryA 214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313 :********************************** ***********************************************************: 7dd2_B_1 214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSXXXXXXXSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313 SecStr :SS S EE B EEEEEEEEEE ------- S EEEE EEEEEEEEE SS EEEEEESSS HHHHHHHHHT S SEEE: ExpBur :eebeeeebbbeeeeebeeebebeebbbbbbbbee-------eeeeebeebbbbbbebeeeebbbebeeebebeebbbbeeeeebbbbbeeeeeebeebee: queryA 314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413 :****************************************************************************************************: 7dd2_B_1 314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413 SecStr :EEEEEE EE EE HHHHT S SSS B SEE SSTTTSS SEEE SS SSS TT EES B EEEEE STTSSS STT: ExpBur :ebeeeeeeeeeebbbbeeeeeebebeebbeeeebebbeebeeeebeebbbebeebeeeeeeebeebeeeebeebeeebbbebbbbbbbbbbebbebbbee: queryA 414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513 :****************************************************************************************************: 7dd2_B_1 414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513 SecStr : TTTTTT B TT S EEE B TTTT TT TT EE SS BT SSS SSS SS EE TTS GGG EEEEE : ExpBur :eeeebbbebbbbbeebebbbbbeebbeebbeeeebeeeebbbeeeeebeeeeebeeeeeeeeeeeebeeeeeeebebbeeebebeeeeeeeebbbbbbbb: Contact : bbbb b bb queryA 514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613 :****************************************************************************************************: 7dd2_B_1 514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613 SecStr : B SS EE S SSEEEEEETTEE EEEE SS B TTSSB EE SSS EEEE EEEEEEEE TTT EEEEE: ExpBur :bbbeeeeebebbbeeeeeeeeeeebbebbbbbeeeebbbeeeeeeeeeeeeeeeeeeeeeebbbbeeeebebbbeebeebebbbbbbbeeebeeebebee: queryA 614:DVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIA: 713 :******* ************************************ ************************: 7dd2_B_1 614:DVNCTEVXXXXXXXXXXXXXXXXXXXXNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXXQSIIAYTMSLGAENSVAYSNNSIA: 713 SecStr :S SS -------------------- EEE SSEEEES EE SS B SEEEETTEEEEEE ------------- EEEEEEB SS EE: ExpBur :ebeeeee--------------------eeeebeebbbeebeeeeeeeeeebebeeebbbbeee-------------eebbbbeeeeeeeeeeeeeeeeee: queryA 714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813 :************************************************************************************************** *: 7dd2_B_1 714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKXS: 813 SecStr :EEEEEEEEEEEEEEE EEE TTTTT SS HHHHHTTSTT SHHHHHHHHHHHHHHHHHHHHHTTS SS S STT TTTS BTT - : ExpBur :bbeebebebeebbbbbbbebbebebeebbbeebeebeebbeeeeeebeebeeebeebbeebeebbeebbeebeeebeeeeeeebeebebeebbbeeee-e: queryA 814:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913 :************** ***********************************************************: 7dd2_B_1 814:KRSFIEDLLFNKVTXXXXXXXXXXXXXXXXXXXXXXXXXXXFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913 SecStr : B TTHHHHHHS --------------------------- SEEE SS HHHHHHHHHHHHHHHHHTTTSTTTSS HHHHHHHHHHHTT T: ExpBur :eebebbebbbeebe---------------------------eebeeeeeeebeeeebbeebbbbbbbbbebbbebeeeeeeeeebeebbbebbeeeebee: queryA 914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013 :************************************************************************ **************************: 7dd2_B_1 914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLI:1013 SecStr :HHHHHSHHHHHHHHHHHHHHHHHHHHH GGGGHHHHHHHHTTHHHHHHHHTTTT TTSS S HHHHHHHS TTTHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :ebbeeeeeebbeebbebbbebeeebeeeeeebeebeebbeebeebbeebeeebeeeeebebbebeebeeeeeeeebeeebeebbebbbebbeebbeebee: queryA 1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113 :****************************************************************************************************: 7dd2_B_1 1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113 SecStr :HHHHHHHHHHHHHHHTTTSSSS STTSSSSSEEEEEEEEEETTEEEEEEEEEEEEEEEEE BS EESSSEEEEESSSEEEE SSSEEEE SSS B: ExpBur :ebeebeeebeebeebbeebbbebbeeeebbbeeebbbbbbbbbeebbbbbbbbbeeeeeeebebbebbbeeeebbeeeeeebbbeeeeeebbbebbebee: queryA 1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDS:1147 :**********************************: 7dd2_B_1 1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDS:1147 SecStr : TTTEEEEEESSSSTT EE THHHHH : ExpBur :ebbeeebeeeeebeeeeeeeeeebeeeeeeeeee: |